DMR 32216 chr12:65220201-65220500 (300bp)

DMR Stats
Positionchr12:65220201-65220500 (View on UCSC)
Width300bp
Genomic Contextintron
Nearest GenesTBC1D30 (0bp away)
ANODEV p-value9.56345605882e-10
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
32216 TBC1D30 6691 uc001ssh.2 chr12 65179791 65274798 + 300 100.0 1.69 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
32216 TBC1D30 6691 uc001ssi.2 chr12 65218352 65272411 + 300 100.0 1.02 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
32216 TBC1D30 6691 uc010sss.2 chr12 65218352 65269164 + 300 100.0 1.02 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
32216 TBC1D30 6691 uc010sst.2 chr12 65218352 65274798 + 300 100.0 1.02 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
32216 chr12 65219144 65221143 cpgShore — values(x.gr)[overs$srow, ]:10222
32216 chr12 65220281 65220307 oreganno OREG0007106 id:OREG0007106, srow:5779
32216 chr12 65220238 65220248 phastConsElements100way lod=36 score:348, srow:2046385
32216 chr12 65220282 65220289 phastConsElements100way lod=57 score:394, srow:2046386
32216 chr12 65220298 65220306 phastConsElements100way lod=63 score:404, srow:2046387
32216 chr12 65220458 65220464 phastConsElements100way lod=13 score:247, srow:2046388
32216 chr12 65219946 65220415 wgEncodeRegDnaseClusteredV2 100 score:655, srow:277647
32216 chr12 65217891 65220414 wgEncodeRegTfbsClusteredV3 EZH2 score:531, expCount:8, expNums:6,15,19,21,36,38,40,43, expScores:292,250,135,332,271,243,216,262, srow:962715
32216 chr12 65219792 65220451 wgEncodeRegTfbsClusteredV3 MTA3 score:361, expCount:1, expNums:95, expScores:361, srow:962742
32216 chr12 65219828 65220423 wgEncodeRegTfbsClusteredV3 NFIC score:400, expCount:1, expNums:97, expScores:400, srow:962743
32216 chr12 65219862 65220381 wgEncodeRegTfbsClusteredV3 FOXM1 score:266, expCount:1, expNums:90, expScores:266, srow:962744
32216 chr12 65219959 65220278 wgEncodeRegTfbsClusteredV3 SP1 score:175, expCount:1, expNums:112, expScores:175, srow:962745
32216 chr12 65219961 65220253 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:1000, srow:962746
32216 chr12 65219994 65220323 wgEncodeRegTfbsClusteredV3 IRF4 score:250, expCount:1, expNums:92, expScores:250, srow:962747
32216 chr12 65220004 65220583 wgEncodeRegTfbsClusteredV3 ATF2 score:509, expCount:2, expNums:79,134, expScores:294,509, srow:962748
32216 chr12 65220004 65220387 wgEncodeRegTfbsClusteredV3 RELA score:156, expCount:1, expNums:300, expScores:156, srow:962749
32216 chr12 65220029 65220564 wgEncodeRegTfbsClusteredV3 SIN3A score:1000, expCount:2, expNums:312,357, expScores:603,1000, srow:962750
32216 chr12 65220036 65220220 wgEncodeRegTfbsClusteredV3 EBF1 score:734, expCount:1, expNums:86, expScores:734, srow:962751
32216 chr12 65220046 65220512 wgEncodeRegTfbsClusteredV3 REST score:1000, expCount:12, expNums:59,98,144,167,188,189,226,248,252,257,258,274, expScores:1000,1000,1000,997,1000,1000,1000,1000,1000,1000,1000,1000, srow:962752
32216 chr12 65220075 65220474 wgEncodeRegTfbsClusteredV3 WRNIP1 score:172, expCount:1, expNums:320, expScores:172, srow:962753
32216 chr12 65220094 65220529 wgEncodeRegTfbsClusteredV3 MAX score:714, expCount:5, expNums:223,296,352,460,511, expScores:714,404,481,165,224, srow:962755
32216 chr12 65220115 65220478 wgEncodeRegTfbsClusteredV3 ELF1 score:188, expCount:1, expNums:88, expScores:188, srow:962756
32216 chr12 65220146 65220449 wgEncodeRegTfbsClusteredV3 ZNF143 score:480, expCount:2, expNums:322,361, expScores:480,368, srow:962757
32216 chr12 65220149 65220492 wgEncodeRegTfbsClusteredV3 MXI1 score:1000, expCount:2, expNums:298,353, expScores:1000,753, srow:962758
32216 chr12 65220150 65220479 wgEncodeRegTfbsClusteredV3 BHLHE40 score:366, expCount:1, expNums:284, expScores:366, srow:962759
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  • 25 of 31 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
32216 cellmeth_recounts PrEC: 0, LNCaP: 110, DU145: 3
32216 cellmeth_diffreps_PrECvsLNCaP A=0, B=88, Length=540, Event=Up, log2FC=Inf, padj=0
32216 cellmeth_diffreps_LNCaPvsDU145 A=94.08, B=1.87, Length=520, Event=Down, log2FC=-5.65, padj=0
32216 cellexp id=ENSG00000111490, name=TBC1D30, PrEC=113, str=44, LNCaP=2147, str=2716, DU145=1374, str=1531
32216 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
32216 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045