DMR Stats | |
---|---|
Position | chr17:1131501-1132200 (View on UCSC) |
Width | 700bp |
Genomic Context | intergenic |
Nearest Genes | ABR (40884bp away) |
ANODEV p-value | 7.36160539934e-10 |
Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 4.0 (44.44 %) |
Frequent? |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
33900 | chr17 | 1131878 | 1133367 | cpgIsland | CpG: 175 | length:1490, cpgNum:175, gcNum:1013, perCpg:23.5, perGc:68, obsExp:1.02, srow:9917 |
33900 | chr17 | 1129878 | 1131877 | cpgShore | — | values(x.gr)[overs$srow, ]:18099 |
33900 | chr17 | 1131759 | 1131761 | phastConsElements100way | lod=14 | score:255, srow:3522484 |
33900 | chr17 | 1132047 | 1132050 | phastConsElements100way | lod=15 | score:262, srow:3522485 |
33900 | chr17 | 1132076 | 1132076 | phastConsElements100way | lod=12 | score:240, srow:3522486 |
33900 | chr17 | 1132082 | 1132090 | phastConsElements100way | lod=50 | score:381, srow:3522487 |
33900 | chr17 | 1132092 | 1132102 | phastConsElements100way | lod=46 | score:373, srow:3522488 |
33900 | chr17 | 1132104 | 1132111 | phastConsElements100way | lod=70 | score:414, srow:3522489 |
33900 | chr17 | 1132113 | 1132144 | phastConsElements100way | lod=143 | score:485, srow:3522490 |
33900 | chr17 | 1132146 | 1132156 | phastConsElements100way | lod=87 | score:436, srow:3522491 |
33900 | chr17 | 1132160 | 1132170 | phastConsElements100way | lod=49 | score:379, srow:3522492 |
33900 | chr17 | 1132176 | 1132177 | phastConsElements100way | lod=17 | score:274, srow:3522493 |
33900 | chr17 | 1132193 | 1132198 | phastConsElements100way | lod=20 | score:290, srow:3522494 |
33900 | chr17 | 1131862 | 1131874 | tfbsConsSites | V$OCT_C | score:844, zScore:2.38, srow:2058513 |
33900 | chr17 | 1132088 | 1132111 | tfbsConsSites | V$STAT5A_02 | score:769, zScore:2.11, srow:2058514 |
33900 | chr17 | 1132141 | 1132158 | tfbsConsSites | V$AHR_01 | score:776, zScore:1.86, srow:2058515 |
33900 | chr17 | 1132147 | 1132156 | tfbsConsSites | V$AP4_Q6 | score:940, zScore:1.7, srow:2058516 |
33900 | chr17 | 1132160 | 1132171 | tfbsConsSites | V$NFKB_C | score:845, zScore:1.8, srow:2058517 |
33900 | chr17 | 1131161 | 1132015 | wgEncodeRegDnaseClusteredV2 | 49 | score:919, srow:471871 |
33900 | chr17 | 1132066 | 1132675 | wgEncodeRegDnaseClusteredV2 | 33 | score:803, srow:471872 |
33900 | chr17 | 1130857 | 1133712 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:880, expCount:10, expNums:6,13,15,17,19,21,36,38,40,43, expScores:475,329,251,163,252,663,335,455,646,274, srow:1608338 |
33900 | chr17 | 1131188 | 1131982 | wgEncodeRegTfbsClusteredV3 | NFIC | score:284, expCount:1, expNums:97, expScores:230, srow:1608342 |
33900 | chr17 | 1131261 | 1131780 | wgEncodeRegTfbsClusteredV3 | ATF2 | score:259, expCount:1, expNums:79, expScores:259, srow:1608343 |
33900 | chr17 | 1131261 | 1131796 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:216, expCount:1, expNums:312, expScores:216, srow:1608344 |
33900 | chr17 | 1131340 | 1132587 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:593, expCount:11, expNums:105,306,307,328,330,332,334,336,338,340,585, expScores:454,433,249,412,306,379,169,593,323,279,400, srow:1608345 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
33900 | cellmeth_recounts | PrEC: 11, LNCaP: 1246, DU145: 10 | |
33900 | cellmeth_diffreps_PrECvsLNCaP | A=26, B=1341, Length=1680, Event=Up, log2FC=5.69, padj=0 | |
33900 | cellmeth_diffreps_LNCaPvsDU145 | A=1436.8, B=17.77, Length=1760, Event=Down, log2FC=-6.34, padj=0 | |
33900 | cellexp | id=ENSG00000159842, name=ABR, PrEC=5958, str=5449, LNCaP=7075, str=4383, DU145=7236, str=5886 | |
33900 | tcgameth | site:cg11424456, B=0.11, L=0.57, H=0.5 | |
33900 | tcgameth | site:cg18331855, B=0.21, L=0.69, H=0.66 | |
33900 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 | |
33900 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 | |
33900 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 | |
33900 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 | |
33900 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 | |
33900 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 | |
33900 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 | |
33900 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 | |
33900 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 | |
33900 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 | |
33900 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 | |
33900 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 | |
33900 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 | |
33900 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |