DMR 17 chr1:1871051-1871200 (150bp)

DMR Stats
Positionchr1:1871051-1871200 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesC1orf222 (11682bp away)
ANODEV p-value0.000778236166161
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
17 chr1 1871099 1871108 tfbsConsSites V$GATA1_01 score:936, zScore:1.66, srow:2786
17 chr1 1871099 1871108 tfbsConsSites V$GATA2_01 score:943, zScore:1.77, srow:2787
17 chr1 1871046 1871086 phastConsElements100way lod=304 score:559, srow:9092
17 chr1 1871090 1871091 phastConsElements100way lod=18 score:280, srow:9093
17 chr1 1871097 1871097 phastConsElements100way lod=13 score:247, srow:9094
17 chr1 1871101 1871103 phastConsElements100way lod=22 score:300, srow:9095
17 chr1 1871106 1871136 phastConsElements100way lod=239 score:536, srow:9096
17 chr1 1871144 1871161 phastConsElements100way lod=109 score:458, srow:9097
17 chr1 1871163 1871173 phastConsElements100way lod=108 score:457, srow:9098
17 chr1 1871175 1871175 phastConsElements100way lod=14 score:255, srow:9099
17 chr1 1871178 1871179 phastConsElements100way lod=34 score:343, srow:9100
17 chr1 1871181 1871185 phastConsElements100way lod=48 score:377, srow:9101
17 chr1 1871187 1871191 phastConsElements100way lod=51 score:383, srow:9102
17 chr1 1871194 1871196 phastConsElements100way lod=16 score:268, srow:9103
17 chr1 1871199 1871200 phastConsElements100way lod=33 score:340, srow:9104
17 chr1 1870716 1872715 cpgShelf — values(x.gr)[overs$srow, ]:131
  • 16 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
17 cellmeth_recounts PrEC: 41, LNCaP: 3, DU145: 1
17 cellmeth_diffreps_PrECvsLNCaP A=119, B=4, Length=640, Event=Down, log2FC=-4.89, padj=0
17 cellmeth_diffreps_PrECvsDU145 A=121, B=2, Length=700, Event=Down, log2FC=-5.92, padj=0
17 cellexp id=ENSG00000142609, name=C1orf222, PrEC=0, str=0, LNCaP=13, str=6, DU145=23, str=8
17 tcgameth site:cg08639799, B=0.69, L=0.64, H=0.61
17 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
17 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305