DMR 25 chr1:2398301-2398450 (150bp)

DMR Stats
Positionchr1:2398301-2398450 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesPLCH2 (9303bp away)
ANODEV p-value0.00789681801454
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25 chr1 2396826 2398825 cpgShore — values(x.gr)[overs$srow, ]:319
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
25 cellmeth_recounts PrEC: 15, LNCaP: 0, DU145: 0
25 cellmeth_diffreps_PrECvsLNCaP A=28, B=0, Length=400, Event=Down, log2FC=-Inf, padj=3.47401535442224e-08
25 cellmeth_diffreps_PrECvsDU145 A=28, B=0, Length=400, Event=Down, log2FC=-Inf, padj=4.7070673891257e-08
25 cellexp id=ENSG00000149527, name=PLCH2, PrEC=15605, str=15786, LNCaP=478, str=150, DU145=59, str=40
25 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305