DMR 28221 chr5:140800351-140801700 (1350bp)

DMR Stats
Positionchr5:140800351-140801700 (View on UCSC)
Width1350bp
Genomic Contextpromoter
Nearest GenesPCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11 (0bp away)
ANODEV p-value3.46570932221e-06
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28221 PCDHGA1 23222 uc003lji.2 chr5 140710252 140892548 + 1350 100.0 2.37 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA2 23222 uc003ljk.2 chr5 140718354 140892548 + 1350 100.0 0.84 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA3 23222 uc003ljm.2 chr5 140723601 140892548 + 1350 100.0 0.42 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB1 23222 uc003ljo.2 chr5 140729828 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA4 23222 uc003ljq.2 chr5 140734768 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB2 23222 uc003ljs.2 chr5 140739703 140892548 + 1350 100.0 0.1 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA5 23222 uc003lju.2 chr5 140743898 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB3 23222 uc003ljw.2 chr5 140749962 140892548 + 1350 100.0 0.13 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA6 23222 uc003ljy.2 chr5 140753651 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA7 23222 uc003lka.2 chr5 140762467 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB4 23222 uc003lkc.2 chr5 140767452 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA8 23222 uc003lkd.2 chr5 140771483 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB5 23222 uc003lkf.2 chr5 140777695 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA9 23222 uc003lkh.2 chr5 140782520 140892548 + 1350 100.0 0.34 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB6 23222 uc003lkj.2 chr5 140787770 140892548 + 1350 100.0 0.52 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA10 23222 uc003lkl.2 chr5 140792743 140892548 + 1350 100.0 1.39 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB7 23222 uc003lkn.2 chr5 140797260 140892548 + 1350 100.0 25.59 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lko.1 chr5 140800537 140803653 + 1164 86.22 0.81 0 50.81 E1 (86.22) 0.0
28221 PCDHGA11 23222 uc003lkp.2 chr5 140800537 140892548 + 1164 86.22 1.55 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lkq.2 chr5 140800537 140892548 + 1164 86.22 0.21 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 20 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28221 chr5 140801073 140802399 cpgShore — values(x.gr)[overs$srow, ]:38345
28221 chr5 140799360 140800760 cpgShore — values(x.gr)[overs$srow, ]:38344
28221 chr5 140801665 140801665 cosmic COSM1310750 srow:979806
28221 chr5 140801620 140801620 cosmic COSM590091 srow:979805
28221 chr5 140801607 140801607 cosmic COSM1159394 srow:979804
28221 chr5 140801569 140801569 cosmic COSM1434538 srow:979803
28221 chr5 140801564 140801564 cosmic COSM590092 srow:979802
28221 chr5 140801534 140801534 cosmic COSM369527 srow:979801
28221 chr5 140801517 140801517 cosmic COSM1063298 srow:979800
28221 chr5 140801497 140801497 cosmic COSM448986 srow:979799
28221 chr5 140801496 140801496 cosmic COSM736638 srow:979798
28221 chr5 140801469 140801469 cosmic COSM1063297 srow:979797
28221 chr5 140801461 140801461 cosmic COSM1261422 srow:979796
28221 chr5 140801457 140801457 cosmic COSM590093 srow:979795
28221 chr5 140801451 140801451 cosmic COSM1063296 srow:979794
28221 chr5 140801374 140801374 cosmic COSM736639 srow:979793
28221 chr5 140801364 140801364 cosmic COSM1496026 srow:979792
28221 chr5 140801354 140801354 cosmic COSM205245 srow:979791
28221 chr5 140801351 140801351 cosmic COSM590094 srow:979790
28221 chr5 140801248 140801248 cosmic COSM1063295 srow:979789
28221 chr5 140801232 140801232 cosmic COSM1434537 srow:979788
28221 chr5 140801182 140801182 cosmic COSM218826 srow:979787
28221 chr5 140801165 140801166 cosmic COSM133452 srow:979786
28221 chr5 140801148 140801148 cosmic COSM1434536 srow:979785
28221 chr5 140801102 140801103 cosmic COSM1434535 srow:979784
  • Page 1 of 9
  • 25 of 205 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28221 cellmeth_recounts PrEC: 5, LNCaP: 18, DU145: 70
28221 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=220, Event=Up, log2FC=Inf, padj=0.000941091010072773
28221 cellmeth_diffreps_PrECvsDU145 A=1, B=17, Length=300, Event=Up, log2FC=4.09, padj=0.00138789698671783
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=15.9, Length=260, Event=Up, log2FC=Inf, padj=0.000457622302526381
28221 cellexp id=ENSG00000081853, name=PCDHGA2, PrEC=36, str=158, LNCaP=143, str=96, DU145=11, str=3
28221 cellexp id=ENSG00000204956, name=PCDHGA1, PrEC=6, str=21, LNCaP=181, str=97, DU145=21, str=2
28221 cellexp id=ENSG00000253305, name=PCDHGB6, PrEC=36, str=69, LNCaP=87, str=56, DU145=42, str=22
28221 cellexp id=ENSG00000253485, name=PCDHGA5, PrEC=4, str=41, LNCaP=162, str=109, DU145=34, str=18
28221 cellexp id=ENSG00000253537, name=PCDHGA7, PrEC=13, str=142, LNCaP=203, str=111, DU145=205, str=106
28221 cellexp id=ENSG00000253731, name=PCDHGA6, PrEC=22, str=128, LNCaP=134, str=106, DU145=54, str=37
28221 cellexp id=ENSG00000253767, name=PCDHGA8, PrEC=7, str=34, LNCaP=303, str=488, DU145=12, str=4
28221 cellexp id=ENSG00000253846, name=PCDHGA10, PrEC=98, str=158, LNCaP=430, str=305, DU145=43, str=31
28221 cellexp id=ENSG00000253873, name=PCDHGA11, PrEC=157, str=176, LNCaP=59, str=31, DU145=18, str=7
28221 cellexp id=ENSG00000253910, name=PCDHGB2, PrEC=9, str=57, LNCaP=166, str=133, DU145=359, str=244
28221 cellexp id=ENSG00000253953, name=PCDHGB4, PrEC=76, str=469, LNCaP=105, str=59, DU145=28, str=16
28221 cellexp id=ENSG00000254122, name=PCDHGB7, PrEC=73, str=160, LNCaP=62, str=35, DU145=94, str=45
28221 cellexp id=ENSG00000254221, name=PCDHGB1, PrEC=13, str=60, LNCaP=234, str=371, DU145=8, str=3
28221 cellexp id=ENSG00000254245, name=PCDHGA3, PrEC=0, str=20, LNCaP=87, str=59, DU145=3, str=0
28221 cellexp id=ENSG00000261934, name=PCDHGA9, PrEC=19, str=28, LNCaP=61, str=20, DU145=46, str=28
28221 cellexp id=ENSG00000262209, name=PCDHGB3, PrEC=13, str=128, LNCaP=76, str=60, DU145=63, str=41
28221 cellexp id=ENSG00000262576, name=PCDHGA4, PrEC=16, str=313, LNCaP=92, str=110, DU145=12, str=9
28221 tcgameth site:cg05870739, B=0.14, L=0.47, H=0.41
28221 tcgameth site:cg06572465, B=0.13, L=0.5, H=0.47
28221 tcgameth site:cg08395122, B=0.42, L=0.56, H=0.56
28221 tcgameth site:cg10679597, B=0.46, L=0.63, H=0.62
28221 tcgameth site:cg13598256, B=0.32, L=0.58, H=0.55
28221 tcgameth site:cg13718539, B=0.33, L=0.58, H=0.54
28221 tcgameth site:cg17857974, B=0.28, L=0.57, H=0.53
28221 tcgameth site:cg18118262, B=0.33, L=0.64, H=0.58
28221 tcgameth site:cg22175873, B=0.35, L=0.61, H=0.59
28221 tcgameth site:cg24954895, B=0.27, L=0.6, H=0.55
28221 tcgaexp gene=PCDHGB4, entrez=8641, pos=chr5:140767452-140892548(+), B=192, L=511, M=249, H=215
28221 tcgaexp gene=PCDHGA8, entrez=9708, pos=chr5:140767452-140892548(+), B=35, L=193, M=48, H=49
28221 tcgaexp gene=PCDHGB7, entrez=56099, pos=chr5:140797214-140892548(+), B=647, L=445, M=489, H=421
28221 tcgaexp gene=PCDHGB6, entrez=56100, pos=chr5:140787770-140892548(+), B=275, L=222, M=268, H=231
28221 tcgaexp gene=PCDHGB5, entrez=56101, pos=chr5:140777695-140892548(+), B=534, L=942, M=758, H=789
28221 tcgaexp gene=PCDHGB3, entrez=56102, pos=chr5:140749962-140892548(+), B=43, L=92, M=60, H=110
28221 tcgaexp gene=PCDHGB2, entrez=56103, pos=chr5:140739703-140892548(+), B=208, L=477, M=456, H=948
28221 tcgaexp gene=PCDHGB1, entrez=56104, pos=chr5:140729828-140892548(+), B=119, L=500, M=401, H=479
28221 tcgaexp gene=PCDHGA11, entrez=56105, pos=chr5:140800537-140892548(+), B=92, L=85, M=109, H=97
28221 tcgaexp gene=PCDHGA10, entrez=56106, pos=chr5:140792743-140892548(+), B=357, L=586, M=404, H=516
28221 tcgaexp gene=PCDHGA9, entrez=56107, pos=chr5:140782520-140892548(+), B=240, L=145, M=152, H=117
28221 tcgaexp gene=PCDHGA7, entrez=56108, pos=chr5:140762467-140892548(+), B=163, L=424, M=275, H=247
28221 tcgaexp gene=PCDHGA6, entrez=56109, pos=chr5:140753651-140892548(+), B=169, L=192, M=147, H=217
28221 tcgaexp gene=PCDHGA5, entrez=56110, pos=chr5:140743898-140892548(+), B=201, L=783, M=537, H=1529
28221 tcgaexp gene=PCDHGA4, entrez=56111, pos=chr5:140734768-140892548(+), B=157, L=356, M=224, H=321
28221 tcgaexp gene=PCDHGA3, entrez=56112, pos=chr5:140723601-140892548(+), B=92, L=232, M=124, H=192
28221 tcgaexp gene=PCDHGA2, entrez=56113, pos=chr5:140718354-140892548(+), B=236, L=401, M=276, H=511
28221 tcgaexp gene=PCDHGA1, entrez=56114, pos=chr5:140710252-140892548(+), B=38, L=108, M=76, H=136