DMR Stats
Positionchr5:140800351-140801700 (View on UCSC)
Width1350bp
Genomic Contextpromoter
Nearest GenesPCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11 (0bp away)
ANODEV p-value3.46570932221e-06
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28221 PCDHGA1 23222 uc003lji.2 chr5 140710252 140892548 + 1350 100.0 2.37 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA2 23222 uc003ljk.2 chr5 140718354 140892548 + 1350 100.0 0.84 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA3 23222 uc003ljm.2 chr5 140723601 140892548 + 1350 100.0 0.42 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB1 23222 uc003ljo.2 chr5 140729828 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA4 23222 uc003ljq.2 chr5 140734768 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB2 23222 uc003ljs.2 chr5 140739703 140892548 + 1350 100.0 0.1 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA5 23222 uc003lju.2 chr5 140743898 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB3 23222 uc003ljw.2 chr5 140749962 140892548 + 1350 100.0 0.13 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA6 23222 uc003ljy.2 chr5 140753651 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA7 23222 uc003lka.2 chr5 140762467 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB4 23222 uc003lkc.2 chr5 140767452 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA8 23222 uc003lkd.2 chr5 140771483 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB5 23222 uc003lkf.2 chr5 140777695 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA9 23222 uc003lkh.2 chr5 140782520 140892548 + 1350 100.0 0.34 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB6 23222 uc003lkj.2 chr5 140787770 140892548 + 1350 100.0 0.52 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA10 23222 uc003lkl.2 chr5 140792743 140892548 + 1350 100.0 1.39 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB7 23222 uc003lkn.2 chr5 140797260 140892548 + 1350 100.0 25.59 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lko.1 chr5 140800537 140803653 + 1164 86.22 0.81 0 50.81 E1 (86.22) 0.0
28221 PCDHGA11 23222 uc003lkp.2 chr5 140800537 140892548 + 1164 86.22 1.55 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lkq.2 chr5 140800537 140892548 + 1164 86.22 0.21 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 20 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28221 chr5 140801090 140801090 cosmic COSM448985 srow:979783
28221 chr5 140801052 140801052 cosmic COSM1542511 srow:979782
28221 chr5 140801035 140801035 cosmic COSM1261423 srow:979781
28221 chr5 140801033 140801033 cosmic COSM1063294 srow:979780
28221 chr5 140801022 140801022 cosmic COSM1063293 srow:979779
28221 chr5 140800990 140800990 cosmic COSM1434534 srow:979778
28221 chr5 140800929 140800929 cosmic COSM1063292 srow:979777
28221 chr5 140800885 140800885 cosmic COSM736640 srow:979776
28221 chr5 140800868 140800868 cosmic COSM1434533 srow:979775
28221 chr5 140800828 140800828 cosmic COSM1063291 srow:979774
28221 chr5 140800805 140800805 cosmic COSM1310749 srow:979773
28221 chr5 140801176 140801185 tfbsConsSites V$GATA6_01 score:968, zScore:1.72, srow:4256992
28221 chr5 140800561 140800571 tfbsConsSites V$NFY_Q6 score:963, zScore:2.21, srow:4256980
28221 chr5 140800848 140800859 tfbsConsSites V$NFAT_Q6 score:954, zScore:2.25, srow:4256985
28221 chr5 140801575 140801583 tfbsConsSites V$ZIC3_01 score:919, zScore:1.81, srow:4257005
28221 chr5 140801485 140801493 tfbsConsSites V$ZIC2_01 score:905, zScore:2.02, srow:4257003
28221 chr5 140801177 140801185 tfbsConsSites V$LMO2COM_02 score:894, zScore:1.66, srow:4256993
28221 chr5 140800644 140800885 wgEncodeRegTfbsClusteredV3 RUNX3 score:886, expCount:1, expNums:109, expScores:886, srow:3333284
28221 chr5 140801479 140801490 tfbsConsSites V$MYCMAX_02 score:873, zScore:1.65, srow:4257001
28221 chr5 140800842 140800856 tfbsConsSites V$OCT1_02 score:872, zScore:2.37, srow:4256981
28221 chr5 140801110 140801123 tfbsConsSites V$OCT1_05 score:863, zScore:2.23, srow:4256989
28221 chr5 140801286 140801299 tfbsConsSites V$P300_01 score:859, zScore:1.97, srow:4256997
28221 chr5 140800418 140800960 wgEncodeRegTfbsClusteredV3 YY1 score:846, expCount:7, expNums:119,128,133,162,244,245,579, expScores:168,256,520,215,132,202,156, srow:3333278
28221 chr5 140801480 140801493 tfbsConsSites V$FAC1_01 score:845, zScore:1.89, srow:4257002
28221 chr5 140800424 140800435 tfbsConsSites V$E4BP4_01 score:842, zScore:2.05, srow:4256978

Omics Overlaps

Dmrid Omic Set Data Plot
28221 cellmeth_recounts PrEC: 5, LNCaP: 18, DU145: 70
28221 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=220, Event=Up, log2FC=Inf, padj=0.000941091010072773
28221 cellmeth_diffreps_PrECvsDU145 A=1, B=17, Length=300, Event=Up, log2FC=4.09, padj=0.00138789698671783
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=15.9, Length=260, Event=Up, log2FC=Inf, padj=0.000457622302526381
28221 cellexp id=ENSG00000081853, name=PCDHGA2, PrEC=36, str=158, LNCaP=143, str=96, DU145=11, str=3
28221 cellexp id=ENSG00000204956, name=PCDHGA1, PrEC=6, str=21, LNCaP=181, str=97, DU145=21, str=2
28221 cellexp id=ENSG00000253305, name=PCDHGB6, PrEC=36, str=69, LNCaP=87, str=56, DU145=42, str=22
28221 cellexp id=ENSG00000253485, name=PCDHGA5, PrEC=4, str=41, LNCaP=162, str=109, DU145=34, str=18
28221 cellexp id=ENSG00000253537, name=PCDHGA7, PrEC=13, str=142, LNCaP=203, str=111, DU145=205, str=106
28221 cellexp id=ENSG00000253731, name=PCDHGA6, PrEC=22, str=128, LNCaP=134, str=106, DU145=54, str=37
28221 cellexp id=ENSG00000253767, name=PCDHGA8, PrEC=7, str=34, LNCaP=303, str=488, DU145=12, str=4
28221 cellexp id=ENSG00000253846, name=PCDHGA10, PrEC=98, str=158, LNCaP=430, str=305, DU145=43, str=31
28221 cellexp id=ENSG00000253873, name=PCDHGA11, PrEC=157, str=176, LNCaP=59, str=31, DU145=18, str=7
28221 cellexp id=ENSG00000253910, name=PCDHGB2, PrEC=9, str=57, LNCaP=166, str=133, DU145=359, str=244
28221 cellexp id=ENSG00000253953, name=PCDHGB4, PrEC=76, str=469, LNCaP=105, str=59, DU145=28, str=16
28221 cellexp id=ENSG00000254122, name=PCDHGB7, PrEC=73, str=160, LNCaP=62, str=35, DU145=94, str=45
28221 cellexp id=ENSG00000254221, name=PCDHGB1, PrEC=13, str=60, LNCaP=234, str=371, DU145=8, str=3
28221 cellexp id=ENSG00000254245, name=PCDHGA3, PrEC=0, str=20, LNCaP=87, str=59, DU145=3, str=0
28221 cellexp id=ENSG00000261934, name=PCDHGA9, PrEC=19, str=28, LNCaP=61, str=20, DU145=46, str=28
28221 cellexp id=ENSG00000262209, name=PCDHGB3, PrEC=13, str=128, LNCaP=76, str=60, DU145=63, str=41
28221 cellexp id=ENSG00000262576, name=PCDHGA4, PrEC=16, str=313, LNCaP=92, str=110, DU145=12, str=9
28221 tcgameth site:cg05870739, B=0.14, L=0.47, H=0.41
28221 tcgameth site:cg06572465, B=0.13, L=0.5, H=0.47
28221 tcgameth site:cg08395122, B=0.42, L=0.56, H=0.56
28221 tcgameth site:cg10679597, B=0.46, L=0.63, H=0.62
28221 tcgameth site:cg13598256, B=0.32, L=0.58, H=0.55
28221 tcgameth site:cg13718539, B=0.33, L=0.58, H=0.54
28221 tcgameth site:cg17857974, B=0.28, L=0.57, H=0.53
28221 tcgameth site:cg18118262, B=0.33, L=0.64, H=0.58
28221 tcgameth site:cg22175873, B=0.35, L=0.61, H=0.59
28221 tcgameth site:cg24954895, B=0.27, L=0.6, H=0.55
28221 tcgaexp gene=PCDHGB4, entrez=8641, pos=chr5:140767452-140892548(+), B=192, L=511, M=249, H=215
28221 tcgaexp gene=PCDHGA8, entrez=9708, pos=chr5:140767452-140892548(+), B=35, L=193, M=48, H=49
28221 tcgaexp gene=PCDHGB7, entrez=56099, pos=chr5:140797214-140892548(+), B=647, L=445, M=489, H=421
28221 tcgaexp gene=PCDHGB6, entrez=56100, pos=chr5:140787770-140892548(+), B=275, L=222, M=268, H=231
28221 tcgaexp gene=PCDHGB5, entrez=56101, pos=chr5:140777695-140892548(+), B=534, L=942, M=758, H=789
28221 tcgaexp gene=PCDHGB3, entrez=56102, pos=chr5:140749962-140892548(+), B=43, L=92, M=60, H=110
28221 tcgaexp gene=PCDHGB2, entrez=56103, pos=chr5:140739703-140892548(+), B=208, L=477, M=456, H=948
28221 tcgaexp gene=PCDHGB1, entrez=56104, pos=chr5:140729828-140892548(+), B=119, L=500, M=401, H=479
28221 tcgaexp gene=PCDHGA11, entrez=56105, pos=chr5:140800537-140892548(+), B=92, L=85, M=109, H=97
28221 tcgaexp gene=PCDHGA10, entrez=56106, pos=chr5:140792743-140892548(+), B=357, L=586, M=404, H=516
28221 tcgaexp gene=PCDHGA9, entrez=56107, pos=chr5:140782520-140892548(+), B=240, L=145, M=152, H=117
28221 tcgaexp gene=PCDHGA7, entrez=56108, pos=chr5:140762467-140892548(+), B=163, L=424, M=275, H=247
28221 tcgaexp gene=PCDHGA6, entrez=56109, pos=chr5:140753651-140892548(+), B=169, L=192, M=147, H=217
28221 tcgaexp gene=PCDHGA5, entrez=56110, pos=chr5:140743898-140892548(+), B=201, L=783, M=537, H=1529
28221 tcgaexp gene=PCDHGA4, entrez=56111, pos=chr5:140734768-140892548(+), B=157, L=356, M=224, H=321
28221 tcgaexp gene=PCDHGA3, entrez=56112, pos=chr5:140723601-140892548(+), B=92, L=232, M=124, H=192
28221 tcgaexp gene=PCDHGA2, entrez=56113, pos=chr5:140718354-140892548(+), B=236, L=401, M=276, H=511
28221 tcgaexp gene=PCDHGA1, entrez=56114, pos=chr5:140710252-140892548(+), B=38, L=108, M=76, H=136