DMR Stats
Positionchr1:1674051-1674250 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesSLC35E2B, SLC35E2 (0bp away)
ANODEV p-value0.00615047926469
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
15 SLC35E2B 82 uc001ahh.4 chr1 1592939 1677438 - 200 100.0 0.58 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
15 SLC35E2 85 uc001ahy.3 chr1 1656277 1677438 - 200 100.0 0.43 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
15 SLC35E2 85 uc001aia.2 chr1 1658824 1677438 - 200 100.0 0.43 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
15 chr1 1673102 1674885 cpgShelf values(x.gr)[overs$srow, ]:118
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
15 cellmeth_recounts PrEC: 60, LNCaP: 6, DU145: 0
15 cellmeth_diffreps_PrECvsLNCaP A=90, B=5, Length=400, Event=Down, log2FC=-4.17, padj=0
15 cellmeth_diffreps_PrECvsDU145 A=90, B=0, Length=460, Event=Down, log2FC=-Inf, padj=0
15 cellexp id=ENSG00000215790, name=SLC35E2, PrEC=72, str=98, LNCaP=209, str=93, DU145=178, str=72
15 tcgaexp gene=SLC35E2, entrez=9906, pos=chr1:1656277-1677438(-), B=144, L=188, M=179, H=195
15 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
15 tcgaexp gene=SLC35E2B, entrez=728661, pos=chr1:1590988-1677438(-), B=5059, L=6323, M=6759, H=6487
15 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305