DMR Stats | |
---|---|
Position | chr5:140012251-140012800 (View on UCSC) |
Width | 550bp |
Genomic Context | promoter |
Nearest Genes | CD14 (0bp away) |
ANODEV p-value | 4.19443505286e-06 |
Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
28149 | CD14 | 23185 | uc003lgi.2 | chr5 | 140011313 | 140013035 | - | 550 | 100.0 | 0.01 | 0 | 48.18 | E1 (26.73), I1 (16.18), E2 (57.27) | 11.27 |
28149 | CD14 | 23185 | uc003lgj.2 | chr5 | 140011313 | 140013286 | - | 550 | 100.0 | 0.01 | 0 | 2.55 | E1 (0), I1 (4.36), E2 (22.55), I2 (16.18), E3 (57.27) | 11.27 |
28149 | CD14 | 23185 | uc021yej.1 | chr5 | 140011313 | 140013286 | - | 550 | 100.0 | 0.01 | 0 | 2.55 | E1 (0), I1 (0), E2 (26.73), I2 (16.18), E3 (57.27) | 11.27 |
28149 | CD14 | 23185 | uc021yek.1 | chr5 | 140011313 | 140013286 | - | 550 | 100.0 | 0.01 | 0 | 2.55 | E1 (0), I1 (4.36), E2 (22.55), I2 (16.18), E3 (57.27) | 11.27 |
28149 | CD14 | 23185 | uc021yel.1 | chr5 | 140011443 | 140012573 | - | 323 | 58.73 | 0.03 | 0 | 100.0 | E1 (58.73) | 34.91 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
28149 | chr5 | 140012301 | 140012304 | phastConsElements100way | lod=22 | score:300, srow:7314905 |
28149 | chr5 | 140012318 | 140012319 | phastConsElements100way | lod=13 | score:247, srow:7314906 |
28149 | chr5 | 140012369 | 140012373 | phastConsElements100way | lod=17 | score:274, srow:7314907 |
28149 | chr5 | 140012379 | 140012385 | phastConsElements100way | lod=20 | score:290, srow:7314908 |
28149 | chr5 | 140012393 | 140012400 | phastConsElements100way | lod=42 | score:363, srow:7314909 |
28149 | chr5 | 140012408 | 140012409 | phastConsElements100way | lod=17 | score:274, srow:7314910 |
28149 | chr5 | 140012417 | 140012418 | phastConsElements100way | lod=14 | score:255, srow:7314911 |
28149 | chr5 | 140012426 | 140012438 | phastConsElements100way | lod=30 | score:330, srow:7314912 |
28149 | chr5 | 140012441 | 140012444 | phastConsElements100way | lod=22 | score:300, srow:7314913 |
28149 | chr5 | 140012447 | 140012448 | phastConsElements100way | lod=14 | score:255, srow:7314914 |
28149 | chr5 | 140012453 | 140012464 | phastConsElements100way | lod=68 | score:411, srow:7314915 |
28149 | chr5 | 140012467 | 140012469 | phastConsElements100way | lod=15 | score:262, srow:7314916 |
28149 | chr5 | 140012483 | 140012489 | phastConsElements100way | lod=32 | score:337, srow:7314917 |
28149 | chr5 | 140012495 | 140012502 | phastConsElements100way | lod=29 | score:327, srow:7314918 |
28149 | chr5 | 140012542 | 140012550 | phastConsElements100way | lod=38 | score:354, srow:7314919 |
28149 | chr5 | 140012565 | 140012568 | phastConsElements100way | lod=15 | score:262, srow:7314920 |
28149 | chr5 | 140012572 | 140012574 | phastConsElements100way | lod=15 | score:262, srow:7314921 |
28149 | chr5 | 140012648 | 140012656 | phastConsElements100way | lod=36 | score:348, srow:7314922 |
28149 | chr5 | 140012783 | 140012787 | phastConsElements100way | lod=13 | score:247, srow:7314923 |
28149 | chr5 | 140011483 | 140012739 | cpgIsland | CpG: 96 | length:1257, cpgNum:96, gcNum:787, perCpg:15.3, perGc:62.6, obsExp:0.78, srow:21129 |
28149 | chr5 | 140012740 | 140014739 | cpgShore | — | values(x.gr)[overs$srow, ]:38216 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
28149 | cellmeth_recounts | PrEC: 1, LNCaP: 45, DU145: 10 | |
28149 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=38, Length=600, Event=Up, log2FC=Inf, padj=3.80001230326287e-11 | |
28149 | cellmeth_diffreps_LNCaPvsDU145 | A=35.28, B=2.81, Length=420, Event=Down, log2FC=-3.65, padj=2.93749481993901e-06 | |
28149 | cellexp | id=ENSG00000170458, name=CD14, PrEC=67, str=53, LNCaP=5, str=3, DU145=82, str=21 | |
28149 | tcgameth | site:cg12143439, B=0.16, L=0.32, H=0.33 | |
28149 | tcgameth | site:cg20943084, B=0.26, L=0.42, H=0.46 | |
28149 | tcgameth | site:cg25358289, B=0.37, L=0.5, H=0.52 | |
28149 | tcgaexp | gene=CD14, entrez=929, pos=chr5:140011313-140013286(-), B=1646, L=1718, M=1490, H=1430 |