DMR Stats | |
---|---|
Position | chr1:1154451-1154700 (View on UCSC) |
Width | 250bp |
Genomic Context | exon |
Nearest Genes | SDF4 (0bp away) |
ANODEV p-value | 0.00192780291335 |
Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 1.0 (11.11 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4 | SDF4 | 51 | uc001adh.4 | chr1 | 1152288 | 1167447 | - | 250 | 100.0 | 1.4 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
4 | SDF4 | 51 | uc001adi.4 | chr1 | 1152288 | 1167447 | - | 250 | 100.0 | 3.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
4 | SDF4 | 51 | uc009vjw.3 | chr1 | 1152288 | 1167447 | - | 250 | 100.0 | 0.8 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
4 | SDF4 | 51 | uc001adg.3 | chr1 | 1152288 | 1156731 | - | 250 | 100.0 | 3.87 | 1 | 0.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
4 | chr1 | 1154420 | 1156419 | cpgShore | — | values(x.gr)[overs$srow, ]:97 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
4 | cellmeth_recounts | PrEC: 29, LNCaP: 96, DU145: 10 | |
4 | cellmeth_diffreps_PrECvsDU145 | A=633, B=27, Length=1120, Event=Down, log2FC=-4.55, padj=0 | |
4 | cellmeth_diffreps_PrECvsDU145 | A=801, B=21, Length=1840, Event=Down, log2FC=-5.25, padj=0 | |
4 | cellmeth_diffreps_LNCaPvsDU145 | A=5225.49, B=78.57, Length=5280, Event=Down, log2FC=-6.06, padj=0 | |
4 | cellexp | id=ENSG00000078808, name=SDF4, PrEC=8539, str=17158, LNCaP=12900, str=10663, DU145=8047, str=7983 | |
4 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
4 | tcgaexp | gene=SDF4, entrez=51150, pos=chr1:1152288-1167447(-), B=9386, L=11625, M=11248, H=9757 | |
4 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |