DMR Stats
Positionchr1:1194651-1194800 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesUBE2J2 (0bp away)
ANODEV p-value0.00511393832828
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
6 UBE2J2 54 uc001adm.4 chr1 1189292 1203372 - 150 100.0 1.33 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
6 UBE2J2 54 uc001ado.3 chr1 1189292 1209234 - 150 100.0 1.05 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
6 UBE2J2 54 uc001adp.3 chr1 1189292 1209234 - 150 100.0 1.05 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
6 UBE2J2 54 uc001adq.3 chr1 1189292 1209234 - 150 100.0 1.4 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
6 UBE2J2 54 uc001adr.3 chr1 1189292 1209234 - 150 100.0 0.99 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
6 chr1 1194189 1194957 wgEncodeRegTfbsClusteredV3 POLR2A score:845, expCount:9, expNums:32,61,62,104,105,123,124,146,192, expScores:232,376,418,374,845,272,253,322,217, srow:2524
6 chr1 1194480 1194719 wgEncodeRegTfbsClusteredV3 REST score:157, expCount:1, expNums:188, expScores:157, srow:2525
6 chr1 1194510 1194929 wgEncodeRegTfbsClusteredV3 TAF1 score:222, expCount:1, expNums:199, expScores:222, srow:2526
6 chr1 1194525 1194834 wgEncodeRegTfbsClusteredV3 NR3C1 score:166, expCount:1, expNums:58, expScores:166, srow:2527
6 chr1 1194528 1194832 wgEncodeRegTfbsClusteredV3 ZNF263 score:599, expCount:1, expNums:368, expScores:599, srow:2528
6 chr1 1194615 1194924 wgEncodeRegTfbsClusteredV3 SUZ12 score:111, expCount:1, expNums:358, expScores:111, srow:2529
6 chr1 1192800 1194799 cpgShelf values(x.gr)[overs$srow, ]:58
  • 7 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
6 cellmeth_recounts PrEC: 259, LNCaP: 136, DU145: 18
6 cellmeth_diffreps_PrECvsLNCaP A=614, B=178, Length=940, Event=Down, log2FC=-1.79, padj=0
6 cellmeth_diffreps_PrECvsDU145 A=626, B=28, Length=1160, Event=Down, log2FC=-4.48, padj=0
6 cellmeth_diffreps_LNCaPvsDU145 A=200.98, B=21.51, Length=720, Event=Down, log2FC=-3.22, padj=0
6 cellexp id=ENSG00000160087, name=UBE2J2, PrEC=3468, str=2350, LNCaP=4637, str=4816, DU145=2791, str=3114
6 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
6 tcgaexp gene=UBE2J2, entrez=118424, pos=chr1:1189292-1209234(-), B=2056, L=2545, M=2565, H=2414
6 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305