DMR Stats | |
---|---|
Position | chr1:1276551-1276750 (View on UCSC) |
Width | 200bp |
Genomic Context | promoter |
Nearest Genes | DVL1 (0bp away) |
ANODEV p-value | 0.000190643872004 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8 | DVL1 | 61 | uc001aer.4 | chr1 | 1270658 | 1284492 | - | 200 | 100.0 | 1.74 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
8 | chr1 | 1274635 | 1276634 | cpgShelf | — | values(x.gr)[overs$srow, ]:67 |
8 | chr1 | 1276069 | 1276790 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:368, expCount:5, expNums:61,105,192,445,527, expScores:368,358,225,86,156, srow:3048 |
8 | chr1 | 1276194 | 1276717 | wgEncodeRegTfbsClusteredV3 | HDAC1 | score:175, expCount:1, expNums:26, expScores:175, srow:3052 |
8 | chr1 | 1276239 | 1276562 | wgEncodeRegTfbsClusteredV3 | ZEB1 | score:187, expCount:1, expNums:121, expScores:187, srow:3053 |
8 | chr1 | 1276388 | 1276691 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:132, expCount:1, expNums:117, expScores:132, srow:3054 |
8 | chr1 | 1276579 | 1277174 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:332, expCount:1, expNums:96, expScores:332, srow:3055 |
8 | chr1 | 1276750 | 1277059 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:114, expCount:1, expNums:358, expScores:114, srow:3056 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
8 | cellmeth_recounts | PrEC: 432, LNCaP: 241, DU145: 61 | |
8 | cellmeth_diffreps_PrECvsLNCaP | A=1425, B=411, Length=1620, Event=Down, log2FC=-1.79, padj=0 | |
8 | cellmeth_diffreps_PrECvsDU145 | A=1523, B=110, Length=1920, Event=Down, log2FC=-3.79, padj=0 | |
8 | cellmeth_diffreps_LNCaPvsDU145 | A=514.21, B=102.9, Length=1900, Event=Down, log2FC=-2.32, padj=0 | |
8 | cellexp | id=ENSG00000107404, name=DVL1, PrEC=11505, str=6807, LNCaP=10517, str=5394, DU145=5106, str=3401 | |
8 | tcgaexp | gene=DVL1, entrez=1855, pos=chr1:1270658-1284492(-), B=3232, L=4637, M=4620, H=4767 | |
8 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
8 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |