DMR 28221 chr5:140800351-140801700 (1350bp)
| DMR Stats | |
|---|---|
| Position | chr5:140800351-140801700 (View on UCSC) |
| Width | 1350bp |
| Genomic Context | promoter |
| Nearest Genes | PCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11 (0bp away) |
| ANODEV p-value | 3.46570932221e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28221 | PCDHGA1 | 23222 | uc003lji.2 | chr5 | 140710252 | 140892548 | + | 1350 | 100.0 | 2.37 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA2 | 23222 | uc003ljk.2 | chr5 | 140718354 | 140892548 | + | 1350 | 100.0 | 0.84 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA3 | 23222 | uc003ljm.2 | chr5 | 140723601 | 140892548 | + | 1350 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGB1 | 23222 | uc003ljo.2 | chr5 | 140729828 | 140892548 | + | 1350 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA4 | 23222 | uc003ljq.2 | chr5 | 140734768 | 140892548 | + | 1350 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGB2 | 23222 | uc003ljs.2 | chr5 | 140739703 | 140892548 | + | 1350 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA5 | 23222 | uc003lju.2 | chr5 | 140743898 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGB3 | 23222 | uc003ljw.2 | chr5 | 140749962 | 140892548 | + | 1350 | 100.0 | 0.13 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA6 | 23222 | uc003ljy.2 | chr5 | 140753651 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA7 | 23222 | uc003lka.2 | chr5 | 140762467 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGB4 | 23222 | uc003lkc.2 | chr5 | 140767452 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA8 | 23222 | uc003lkd.2 | chr5 | 140771483 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGB5 | 23222 | uc003lkf.2 | chr5 | 140777695 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA9 | 23222 | uc003lkh.2 | chr5 | 140782520 | 140892548 | + | 1350 | 100.0 | 0.34 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGB6 | 23222 | uc003lkj.2 | chr5 | 140787770 | 140892548 | + | 1350 | 100.0 | 0.52 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA10 | 23222 | uc003lkl.2 | chr5 | 140792743 | 140892548 | + | 1350 | 100.0 | 1.39 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGB7 | 23222 | uc003lkn.2 | chr5 | 140797260 | 140892548 | + | 1350 | 100.0 | 25.59 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA11 | 23222 | uc003lko.1 | chr5 | 140800537 | 140803653 | + | 1164 | 86.22 | 0.81 | 0 | 50.81 | E1 (86.22) | 0.0 |
| 28221 | PCDHGA11 | 23222 | uc003lkp.2 | chr5 | 140800537 | 140892548 | + | 1164 | 86.22 | 1.55 | 0 | 50.81 | E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 28221 | PCDHGA11 | 23222 | uc003lkq.2 | chr5 | 140800537 | 140892548 | + | 1164 | 86.22 | 0.21 | 0 | 50.81 | E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
- 20 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 28221 | chr5 | 140800929 | 140800929 | cosmic | COSM1063292 | srow:979777 |
| 28221 | chr5 | 140800930 | 140800931 | phastConsElements100way | lod=36 | score:348, srow:7331702 |
| 28221 | chr5 | 140800933 | 140800934 | phastConsElements100way | lod=42 | score:363, srow:7331703 |
| 28221 | chr5 | 140800936 | 140800937 | phastConsElements100way | lod=18 | score:280, srow:7331704 |
| 28221 | chr5 | 140800940 | 140800940 | phastConsElements100way | lod=18 | score:280, srow:7331705 |
| 28221 | chr5 | 140800946 | 140800949 | phastConsElements100way | lod=43 | score:366, srow:7331706 |
| 28221 | chr5 | 140800952 | 140800955 | phastConsElements100way | lod=37 | score:351, srow:7331707 |
| 28221 | chr5 | 140800958 | 140800961 | phastConsElements100way | lod=25 | score:312, srow:7331708 |
| 28221 | chr5 | 140800972 | 140800973 | phastConsElements100way | lod=14 | score:255, srow:7331709 |
| 28221 | chr5 | 140800981 | 140800982 | phastConsElements100way | lod=15 | score:262, srow:7331710 |
| 28221 | chr5 | 140800990 | 140800990 | cosmic | COSM1434534 | srow:979778 |
| 28221 | chr5 | 140800990 | 140800991 | phastConsElements100way | lod=28 | score:323, srow:7331711 |
| 28221 | chr5 | 140800994 | 140800994 | phastConsElements100way | lod=16 | score:268, srow:7331712 |
| 28221 | chr5 | 140801017 | 140801021 | phastConsElements100way | lod=24 | score:308, srow:7331713 |
| 28221 | chr5 | 140801022 | 140801022 | cosmic | COSM1063293 | srow:979779 |
| 28221 | chr5 | 140801027 | 140801027 | phastConsElements100way | lod=14 | score:255, srow:7331714 |
| 28221 | chr5 | 140801033 | 140801033 | cosmic | COSM1063294 | srow:979780 |
| 28221 | chr5 | 140801035 | 140801035 | cosmic | COSM1261423 | srow:979781 |
| 28221 | chr5 | 140801040 | 140801057 | tfbsConsSites | V$MIF1_01 | score:778, zScore:1.94, srow:4256988 |
| 28221 | chr5 | 140801041 | 140801042 | phastConsElements100way | lod=37 | score:351, srow:7331715 |
| 28221 | chr5 | 140801048 | 140801048 | phastConsElements100way | lod=16 | score:268, srow:7331716 |
| 28221 | chr5 | 140801052 | 140801052 | cosmic | COSM1542511 | srow:979782 |
| 28221 | chr5 | 140801062 | 140801066 | phastConsElements100way | lod=30 | score:330, srow:7331717 |
| 28221 | chr5 | 140801068 | 140801072 | phastConsElements100way | lod=60 | score:399, srow:7331718 |
| 28221 | chr5 | 140801073 | 140802399 | cpgShore | — | values(x.gr)[overs$srow, ]:38345 |
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 28221 | cellmeth_recounts | PrEC: 5, LNCaP: 18, DU145: 70 |  |
| 28221 | cellmeth_diffreps_PrECvsDU145 | A=0, B=13, Length=220, Event=Up, log2FC=Inf, padj=0.000941091010072773 |  |
| 28221 | cellmeth_diffreps_PrECvsDU145 | A=1, B=17, Length=300, Event=Up, log2FC=4.09, padj=0.00138789698671783 |  |
| 28221 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864 |  |
| 28221 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=15.9, Length=260, Event=Up, log2FC=Inf, padj=0.000457622302526381 |  |
| 28221 | cellexp | id=ENSG00000081853, name=PCDHGA2, PrEC=36, str=158, LNCaP=143, str=96, DU145=11, str=3 |  |
| 28221 | cellexp | id=ENSG00000204956, name=PCDHGA1, PrEC=6, str=21, LNCaP=181, str=97, DU145=21, str=2 |  |
| 28221 | cellexp | id=ENSG00000253305, name=PCDHGB6, PrEC=36, str=69, LNCaP=87, str=56, DU145=42, str=22 |  |
| 28221 | cellexp | id=ENSG00000253485, name=PCDHGA5, PrEC=4, str=41, LNCaP=162, str=109, DU145=34, str=18 |  |
| 28221 | cellexp | id=ENSG00000253537, name=PCDHGA7, PrEC=13, str=142, LNCaP=203, str=111, DU145=205, str=106 |  |
| 28221 | cellexp | id=ENSG00000253731, name=PCDHGA6, PrEC=22, str=128, LNCaP=134, str=106, DU145=54, str=37 |  |
| 28221 | cellexp | id=ENSG00000253767, name=PCDHGA8, PrEC=7, str=34, LNCaP=303, str=488, DU145=12, str=4 |  |
| 28221 | cellexp | id=ENSG00000253846, name=PCDHGA10, PrEC=98, str=158, LNCaP=430, str=305, DU145=43, str=31 |  |
| 28221 | cellexp | id=ENSG00000253873, name=PCDHGA11, PrEC=157, str=176, LNCaP=59, str=31, DU145=18, str=7 |  |
| 28221 | cellexp | id=ENSG00000253910, name=PCDHGB2, PrEC=9, str=57, LNCaP=166, str=133, DU145=359, str=244 |  |
| 28221 | cellexp | id=ENSG00000253953, name=PCDHGB4, PrEC=76, str=469, LNCaP=105, str=59, DU145=28, str=16 |  |
| 28221 | cellexp | id=ENSG00000254122, name=PCDHGB7, PrEC=73, str=160, LNCaP=62, str=35, DU145=94, str=45 |  |
| 28221 | cellexp | id=ENSG00000254221, name=PCDHGB1, PrEC=13, str=60, LNCaP=234, str=371, DU145=8, str=3 |  |
| 28221 | cellexp | id=ENSG00000254245, name=PCDHGA3, PrEC=0, str=20, LNCaP=87, str=59, DU145=3, str=0 |  |
| 28221 | cellexp | id=ENSG00000261934, name=PCDHGA9, PrEC=19, str=28, LNCaP=61, str=20, DU145=46, str=28 |  |
| 28221 | cellexp | id=ENSG00000262209, name=PCDHGB3, PrEC=13, str=128, LNCaP=76, str=60, DU145=63, str=41 |  |
| 28221 | cellexp | id=ENSG00000262576, name=PCDHGA4, PrEC=16, str=313, LNCaP=92, str=110, DU145=12, str=9 |  |
| 28221 | tcgameth | site:cg05870739, B=0.14, L=0.47, H=0.41 |  |
| 28221 | tcgameth | site:cg06572465, B=0.13, L=0.5, H=0.47 |  |
| 28221 | tcgameth | site:cg08395122, B=0.42, L=0.56, H=0.56 |  |
| 28221 | tcgameth | site:cg10679597, B=0.46, L=0.63, H=0.62 |  |
| 28221 | tcgameth | site:cg13598256, B=0.32, L=0.58, H=0.55 |  |
| 28221 | tcgameth | site:cg13718539, B=0.33, L=0.58, H=0.54 |  |
| 28221 | tcgameth | site:cg17857974, B=0.28, L=0.57, H=0.53 |  |
| 28221 | tcgameth | site:cg18118262, B=0.33, L=0.64, H=0.58 |  |
| 28221 | tcgameth | site:cg22175873, B=0.35, L=0.61, H=0.59 |  |
| 28221 | tcgameth | site:cg24954895, B=0.27, L=0.6, H=0.55 |  |
| 28221 | tcgaexp | gene=PCDHGB4, entrez=8641, pos=chr5:140767452-140892548(+), B=192, L=511, M=249, H=215 |  |
| 28221 | tcgaexp | gene=PCDHGA8, entrez=9708, pos=chr5:140767452-140892548(+), B=35, L=193, M=48, H=49 |  |
| 28221 | tcgaexp | gene=PCDHGB7, entrez=56099, pos=chr5:140797214-140892548(+), B=647, L=445, M=489, H=421 |  |
| 28221 | tcgaexp | gene=PCDHGB6, entrez=56100, pos=chr5:140787770-140892548(+), B=275, L=222, M=268, H=231 |  |
| 28221 | tcgaexp | gene=PCDHGB5, entrez=56101, pos=chr5:140777695-140892548(+), B=534, L=942, M=758, H=789 |  |
| 28221 | tcgaexp | gene=PCDHGB3, entrez=56102, pos=chr5:140749962-140892548(+), B=43, L=92, M=60, H=110 |  |
| 28221 | tcgaexp | gene=PCDHGB2, entrez=56103, pos=chr5:140739703-140892548(+), B=208, L=477, M=456, H=948 |  |
| 28221 | tcgaexp | gene=PCDHGB1, entrez=56104, pos=chr5:140729828-140892548(+), B=119, L=500, M=401, H=479 |  |
| 28221 | tcgaexp | gene=PCDHGA11, entrez=56105, pos=chr5:140800537-140892548(+), B=92, L=85, M=109, H=97 |  |
| 28221 | tcgaexp | gene=PCDHGA10, entrez=56106, pos=chr5:140792743-140892548(+), B=357, L=586, M=404, H=516 |  |
| 28221 | tcgaexp | gene=PCDHGA9, entrez=56107, pos=chr5:140782520-140892548(+), B=240, L=145, M=152, H=117 |  |
| 28221 | tcgaexp | gene=PCDHGA7, entrez=56108, pos=chr5:140762467-140892548(+), B=163, L=424, M=275, H=247 |  |
| 28221 | tcgaexp | gene=PCDHGA6, entrez=56109, pos=chr5:140753651-140892548(+), B=169, L=192, M=147, H=217 |  |
| 28221 | tcgaexp | gene=PCDHGA5, entrez=56110, pos=chr5:140743898-140892548(+), B=201, L=783, M=537, H=1529 |  |
| 28221 | tcgaexp | gene=PCDHGA4, entrez=56111, pos=chr5:140734768-140892548(+), B=157, L=356, M=224, H=321 |  |
| 28221 | tcgaexp | gene=PCDHGA3, entrez=56112, pos=chr5:140723601-140892548(+), B=92, L=232, M=124, H=192 |  |
| 28221 | tcgaexp | gene=PCDHGA2, entrez=56113, pos=chr5:140718354-140892548(+), B=236, L=401, M=276, H=511 |  |
| 28221 | tcgaexp | gene=PCDHGA1, entrez=56114, pos=chr5:140710252-140892548(+), B=38, L=108, M=76, H=136 |  |