DMR Stats
Positionchr1:1990651-1990950 (View on UCSC)
Width300bp
Genomic Contextintron
Nearest GenesPRKCZ (0bp away)
ANODEV p-value0.0149657085152
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
18 PRKCZ 94 uc001aiq.3 chr1 1981909 2116834 + 300 100.0 0.43 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
18 chr1 1990780 1991171 cpgIsland CpG: 29 length:392, cpgNum:29, gcNum:240, perCpg:14.8, perGc:61.2, obsExp:0.8, srow:159
18 chr1 1990663 1991102 wgEncodeRegTfbsClusteredV3 MYC score:188, expCount:2, expNums:487,489, expScores:188,176, srow:6040
18 chr1 1990733 1991042 wgEncodeRegTfbsClusteredV3 GABPA score:203, expCount:1, expNums:220, expScores:203, srow:6042
18 chr1 1990768 1990968 wgEncodeRegTfbsClusteredV3 E2F6 score:488, expCount:2, expNums:215,495, expScores:488,326, srow:6043
18 chr1 1990719 1991024 wgEncodeRegTfbsClusteredV3 MAX score:752, expCount:2, expNums:223,511, expScores:752,544, srow:6041
18 chr1 1988780 1990779 cpgShore values(x.gr)[overs$srow, ]:252
  • 6 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
18 cellmeth_recounts PrEC: 194, LNCaP: 34, DU145: 14
18 cellmeth_diffreps_PrECvsLNCaP A=582, B=75, Length=780, Event=Down, log2FC=-2.96, padj=0
18 cellmeth_diffreps_PrECvsDU145 A=582, B=29, Length=780, Event=Down, log2FC=-4.33, padj=0
18 cellmeth_diffreps_LNCaPvsDU145 A=63.07, B=19.64, Length=340, Event=Down, log2FC=-1.68, padj=0.000191995992107512
18 cellexp id=ENSG00000067606, name=PRKCZ, PrEC=1187, str=1283, LNCaP=1606, str=1028, DU145=964, str=723
18 tcgameth site:cg06340969, B=0.95, L=0.94, H=0.94
18 tcgameth site:cg08115172, B=0.96, L=0.96, H=0.95
18 tcgaexp gene=PRKCZ, entrez=5590, pos=chr1:1981909-2116834(+), B=1809, L=2383, M=2268, H=1943
18 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
18 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305