DMR 28221 chr5:140800351-140801700 (1350bp)

DMR Stats
Positionchr5:140800351-140801700 (View on UCSC)
Width1350bp
Genomic Contextpromoter
Nearest GenesPCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11 (0bp away)
ANODEV p-value3.46570932221e-06
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28221 PCDHGA1 23222 uc003lji.2 chr5 140710252 140892548 + 1350 100.0 2.37 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA2 23222 uc003ljk.2 chr5 140718354 140892548 + 1350 100.0 0.84 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA3 23222 uc003ljm.2 chr5 140723601 140892548 + 1350 100.0 0.42 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB1 23222 uc003ljo.2 chr5 140729828 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA4 23222 uc003ljq.2 chr5 140734768 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB2 23222 uc003ljs.2 chr5 140739703 140892548 + 1350 100.0 0.1 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA5 23222 uc003lju.2 chr5 140743898 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB3 23222 uc003ljw.2 chr5 140749962 140892548 + 1350 100.0 0.13 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA6 23222 uc003ljy.2 chr5 140753651 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA7 23222 uc003lka.2 chr5 140762467 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB4 23222 uc003lkc.2 chr5 140767452 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA8 23222 uc003lkd.2 chr5 140771483 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB5 23222 uc003lkf.2 chr5 140777695 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA9 23222 uc003lkh.2 chr5 140782520 140892548 + 1350 100.0 0.34 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB6 23222 uc003lkj.2 chr5 140787770 140892548 + 1350 100.0 0.52 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA10 23222 uc003lkl.2 chr5 140792743 140892548 + 1350 100.0 1.39 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB7 23222 uc003lkn.2 chr5 140797260 140892548 + 1350 100.0 25.59 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lko.1 chr5 140800537 140803653 + 1164 86.22 0.81 0 50.81 E1 (86.22) 0.0
28221 PCDHGA11 23222 uc003lkp.2 chr5 140800537 140892548 + 1164 86.22 1.55 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lkq.2 chr5 140800537 140892548 + 1164 86.22 0.21 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 20 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28221 chr5 140800370 140800720 oreganno OREG0016864 id:OREG0016864, srow:18068
28221 chr5 140800761 140801072 cpgIsland CpG: 29 length:312, cpgNum:29, gcNum:196, perCpg:18.6, perGc:62.8, obsExp:0.96, srow:21212
28221 chr5 140800426 140800692 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:10, expNums:108,149,193,231,264,310,355,405,466,529, expScores:897,1000,329,421,192,676,1000,370,860,125, srow:3333279
28221 chr5 140800361 140800740 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:89, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,137,174,213,290,463,493,595,597,598,601,603,604,605,606,607,609,612,618,621,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,689, expScores:884,1000,685,623,162,162,557,531,810,1000,460,941,707,429,1000,134,95,861,332,460,1000,1000,969,274,770,1000,1000,878,1000,1000,493,1000,347,383,680,808,252,266,238,333,984,397,204,519,548,403,654,970,874,452,651,791,747,554,1000,294,723,466,828,527,519,1000,445,840,1000,195,649,653,213,132,266,519,149,1000,1000,796,332,764,445,859,464,195,268,460,352,275,589,442,329, srow:3333273
28221 chr5 140800401 140800915 wgEncodeRegDnaseClusteredV2 109 score:1000, srow:974648
28221 chr5 140801246 140801395 wgEncodeRegDnaseClusteredV2 3 score:158, srow:974650
28221 chr5 140800360 140800795 wgEncodeRegTfbsClusteredV3 MAZ score:188, expCount:2, expNums:297,512, expScores:188,178, srow:3333272
28221 chr5 140800466 140800729 wgEncodeRegTfbsClusteredV3 PAX5 score:194, expCount:1, expNums:100, expScores:194, srow:3333280
28221 chr5 140801426 140801495 wgEncodeRegDnaseClusteredV2 2 score:203, srow:974651
28221 chr5 140800343 140800938 wgEncodeRegTfbsClusteredV3 NFIC score:226, expCount:1, expNums:97, expScores:226, srow:3333271
28221 chr5 140800390 140800709 wgEncodeRegTfbsClusteredV3 POU2F2 score:232, expCount:1, expNums:106, expScores:232, srow:3333275
28221 chr5 140800491 140800743 wgEncodeRegTfbsClusteredV3 EGR1 score:233, expCount:2, expNums:87,216, expScores:233,196, srow:3333282
28221 chr5 140800488 140800491 phastConsElements100way lod=13 score:247, srow:7331687
28221 chr5 140800729 140800731 phastConsElements100way lod=13 score:247, srow:7331694
28221 chr5 140800823 140800823 phastConsElements100way lod=13 score:247, srow:7331696
28221 chr5 140801153 140801153 phastConsElements100way lod=13 score:247, srow:7331731
28221 chr5 140801495 140801495 phastConsElements100way lod=13 score:247, srow:7331778
28221 chr5 140801542 140801542 phastConsElements100way lod=13 score:247, srow:7331784
28221 chr5 140800515 140800517 phastConsElements100way lod=14 score:255, srow:7331689
28221 chr5 140800972 140800973 phastConsElements100way lod=14 score:255, srow:7331709
28221 chr5 140801027 140801027 phastConsElements100way lod=14 score:255, srow:7331714
28221 chr5 140801120 140801120 phastConsElements100way lod=14 score:255, srow:7331724
28221 chr5 140801138 140801138 phastConsElements100way lod=14 score:255, srow:7331728
28221 chr5 140801141 140801141 phastConsElements100way lod=14 score:255, srow:7331729
28221 chr5 140801174 140801174 phastConsElements100way lod=14 score:255, srow:7331736
  • Page 1 of 9
  • 25 of 205 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28221 cellmeth_recounts PrEC: 5, LNCaP: 18, DU145: 70
28221 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=220, Event=Up, log2FC=Inf, padj=0.000941091010072773
28221 cellmeth_diffreps_PrECvsDU145 A=1, B=17, Length=300, Event=Up, log2FC=4.09, padj=0.00138789698671783
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=15.9, Length=260, Event=Up, log2FC=Inf, padj=0.000457622302526381
28221 cellexp id=ENSG00000081853, name=PCDHGA2, PrEC=36, str=158, LNCaP=143, str=96, DU145=11, str=3
28221 cellexp id=ENSG00000204956, name=PCDHGA1, PrEC=6, str=21, LNCaP=181, str=97, DU145=21, str=2
28221 cellexp id=ENSG00000253305, name=PCDHGB6, PrEC=36, str=69, LNCaP=87, str=56, DU145=42, str=22
28221 cellexp id=ENSG00000253485, name=PCDHGA5, PrEC=4, str=41, LNCaP=162, str=109, DU145=34, str=18
28221 cellexp id=ENSG00000253537, name=PCDHGA7, PrEC=13, str=142, LNCaP=203, str=111, DU145=205, str=106
28221 cellexp id=ENSG00000253731, name=PCDHGA6, PrEC=22, str=128, LNCaP=134, str=106, DU145=54, str=37
28221 cellexp id=ENSG00000253767, name=PCDHGA8, PrEC=7, str=34, LNCaP=303, str=488, DU145=12, str=4
28221 cellexp id=ENSG00000253846, name=PCDHGA10, PrEC=98, str=158, LNCaP=430, str=305, DU145=43, str=31
28221 cellexp id=ENSG00000253873, name=PCDHGA11, PrEC=157, str=176, LNCaP=59, str=31, DU145=18, str=7
28221 cellexp id=ENSG00000253910, name=PCDHGB2, PrEC=9, str=57, LNCaP=166, str=133, DU145=359, str=244
28221 cellexp id=ENSG00000253953, name=PCDHGB4, PrEC=76, str=469, LNCaP=105, str=59, DU145=28, str=16
28221 cellexp id=ENSG00000254122, name=PCDHGB7, PrEC=73, str=160, LNCaP=62, str=35, DU145=94, str=45
28221 cellexp id=ENSG00000254221, name=PCDHGB1, PrEC=13, str=60, LNCaP=234, str=371, DU145=8, str=3
28221 cellexp id=ENSG00000254245, name=PCDHGA3, PrEC=0, str=20, LNCaP=87, str=59, DU145=3, str=0
28221 cellexp id=ENSG00000261934, name=PCDHGA9, PrEC=19, str=28, LNCaP=61, str=20, DU145=46, str=28
28221 cellexp id=ENSG00000262209, name=PCDHGB3, PrEC=13, str=128, LNCaP=76, str=60, DU145=63, str=41
28221 cellexp id=ENSG00000262576, name=PCDHGA4, PrEC=16, str=313, LNCaP=92, str=110, DU145=12, str=9
28221 tcgameth site:cg05870739, B=0.14, L=0.47, H=0.41
28221 tcgameth site:cg06572465, B=0.13, L=0.5, H=0.47
28221 tcgameth site:cg08395122, B=0.42, L=0.56, H=0.56
28221 tcgameth site:cg10679597, B=0.46, L=0.63, H=0.62
28221 tcgameth site:cg13598256, B=0.32, L=0.58, H=0.55
28221 tcgameth site:cg13718539, B=0.33, L=0.58, H=0.54
28221 tcgameth site:cg17857974, B=0.28, L=0.57, H=0.53
28221 tcgameth site:cg18118262, B=0.33, L=0.64, H=0.58
28221 tcgameth site:cg22175873, B=0.35, L=0.61, H=0.59
28221 tcgameth site:cg24954895, B=0.27, L=0.6, H=0.55
28221 tcgaexp gene=PCDHGB4, entrez=8641, pos=chr5:140767452-140892548(+), B=192, L=511, M=249, H=215
28221 tcgaexp gene=PCDHGA8, entrez=9708, pos=chr5:140767452-140892548(+), B=35, L=193, M=48, H=49
28221 tcgaexp gene=PCDHGB7, entrez=56099, pos=chr5:140797214-140892548(+), B=647, L=445, M=489, H=421
28221 tcgaexp gene=PCDHGB6, entrez=56100, pos=chr5:140787770-140892548(+), B=275, L=222, M=268, H=231
28221 tcgaexp gene=PCDHGB5, entrez=56101, pos=chr5:140777695-140892548(+), B=534, L=942, M=758, H=789
28221 tcgaexp gene=PCDHGB3, entrez=56102, pos=chr5:140749962-140892548(+), B=43, L=92, M=60, H=110
28221 tcgaexp gene=PCDHGB2, entrez=56103, pos=chr5:140739703-140892548(+), B=208, L=477, M=456, H=948
28221 tcgaexp gene=PCDHGB1, entrez=56104, pos=chr5:140729828-140892548(+), B=119, L=500, M=401, H=479
28221 tcgaexp gene=PCDHGA11, entrez=56105, pos=chr5:140800537-140892548(+), B=92, L=85, M=109, H=97
28221 tcgaexp gene=PCDHGA10, entrez=56106, pos=chr5:140792743-140892548(+), B=357, L=586, M=404, H=516
28221 tcgaexp gene=PCDHGA9, entrez=56107, pos=chr5:140782520-140892548(+), B=240, L=145, M=152, H=117
28221 tcgaexp gene=PCDHGA7, entrez=56108, pos=chr5:140762467-140892548(+), B=163, L=424, M=275, H=247
28221 tcgaexp gene=PCDHGA6, entrez=56109, pos=chr5:140753651-140892548(+), B=169, L=192, M=147, H=217
28221 tcgaexp gene=PCDHGA5, entrez=56110, pos=chr5:140743898-140892548(+), B=201, L=783, M=537, H=1529
28221 tcgaexp gene=PCDHGA4, entrez=56111, pos=chr5:140734768-140892548(+), B=157, L=356, M=224, H=321
28221 tcgaexp gene=PCDHGA3, entrez=56112, pos=chr5:140723601-140892548(+), B=92, L=232, M=124, H=192
28221 tcgaexp gene=PCDHGA2, entrez=56113, pos=chr5:140718354-140892548(+), B=236, L=401, M=276, H=511
28221 tcgaexp gene=PCDHGA1, entrez=56114, pos=chr5:140710252-140892548(+), B=38, L=108, M=76, H=136