DMR Stats
Positionchr1:1158251-1158450 (View on UCSC)
Width200bp
Genomic Context3' end
Nearest GenesSDF4 (0bp away)
ANODEV p-value0.00794969466675
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
5 SDF4 51 uc001adh.4 chr1 1152288 1167447 - 200 100.0 1.06 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
5 SDF4 51 uc001adi.4 chr1 1152288 1167447 - 200 100.0 1.86 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
5 SDF4 51 uc001adj.1 chr1 1158104 1159348 - 200 100.0 0.8 0 0.0 E1 (0), I1 (0), E2 (100) 100.0
5 SDF4 51 uc009vjw.3 chr1 1152288 1167447 - 200 100.0 1.07 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
5 chr1 1158156 1158465 wgEncodeRegTfbsClusteredV3 GATA1 score:104, expCount:1, expNums:497, expScores:104, srow:2323
5 chr1 1158238 1158547 wgEncodeRegTfbsClusteredV3 SUZ12 score:184, expCount:1, expNums:358, expScores:184, srow:2325
5 chr1 1158181 1158550 wgEncodeRegDnaseClusteredV2 4 score:203, srow:445
5 chr1 1158403 1158622 wgEncodeRegTfbsClusteredV3 PBX3 score:253, expCount:1, expNums:102, expScores:253, srow:2327
5 chr1 1158124 1158473 wgEncodeRegTfbsClusteredV3 STAT5A score:393, expCount:1, expNums:237, expScores:393, srow:2322
5 chr1 1158407 1158540 wgEncodeRegTfbsClusteredV3 TCF3 score:444, expCount:1, expNums:117, expScores:444, srow:2328
5 chr1 1158339 1158638 wgEncodeRegTfbsClusteredV3 BCL3 score:488, expCount:1, expNums:83, expScores:488, srow:2326
5 chr1 1158188 1158783 wgEncodeRegTfbsClusteredV3 NFATC1 score:538, expCount:1, expNums:96, expScores:538, srow:2324
5 chr1 1158110 1158755 wgEncodeRegTfbsClusteredV3 POLR2A score:626, expCount:5, expNums:61,104,105,130,616, expScores:363,378,626,268,251, srow:2321
5 chr1 1157169 1159168 cpgShore values(x.gr)[overs$srow, ]:98
  • 10 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
5 cellmeth_recounts PrEC: 1352, LNCaP: 1246, DU145: 56
5 cellmeth_diffreps_PrECvsLNCaP A=2552, B=1334, Length=720, Event=Down, log2FC=-0.94, padj=0
5 cellmeth_diffreps_PrECvsDU145 A=3018, B=105, Length=1800, Event=Down, log2FC=-4.85, padj=0
5 cellmeth_diffreps_LNCaPvsDU145 A=1742.54, B=97.28, Length=1780, Event=Down, log2FC=-4.16, padj=0
5 cellexp id=ENSG00000078808, name=SDF4, PrEC=8539, str=17158, LNCaP=12900, str=10663, DU145=8047, str=7983
5 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
5 tcgaexp gene=SDF4, entrez=51150, pos=chr1:1152288-1167447(-), B=9386, L=11625, M=11248, H=9757
5 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305