DMR Stats
Positionchr5:140800351-140801700 (View on UCSC)
Width1350bp
Genomic Contextpromoter
Nearest GenesPCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11 (0bp away)
ANODEV p-value3.46570932221e-06
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28221 PCDHGA1 23222 uc003lji.2 chr5 140710252 140892548 + 1350 100.0 2.37 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA2 23222 uc003ljk.2 chr5 140718354 140892548 + 1350 100.0 0.84 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA3 23222 uc003ljm.2 chr5 140723601 140892548 + 1350 100.0 0.42 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB1 23222 uc003ljo.2 chr5 140729828 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA4 23222 uc003ljq.2 chr5 140734768 140892548 + 1350 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB2 23222 uc003ljs.2 chr5 140739703 140892548 + 1350 100.0 0.1 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA5 23222 uc003lju.2 chr5 140743898 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB3 23222 uc003ljw.2 chr5 140749962 140892548 + 1350 100.0 0.13 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA6 23222 uc003ljy.2 chr5 140753651 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA7 23222 uc003lka.2 chr5 140762467 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB4 23222 uc003lkc.2 chr5 140767452 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA8 23222 uc003lkd.2 chr5 140771483 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB5 23222 uc003lkf.2 chr5 140777695 140892548 + 1350 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA9 23222 uc003lkh.2 chr5 140782520 140892548 + 1350 100.0 0.34 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB6 23222 uc003lkj.2 chr5 140787770 140892548 + 1350 100.0 0.52 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA10 23222 uc003lkl.2 chr5 140792743 140892548 + 1350 100.0 1.39 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGB7 23222 uc003lkn.2 chr5 140797260 140892548 + 1350 100.0 25.59 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lko.1 chr5 140800537 140803653 + 1164 86.22 0.81 0 50.81 E1 (86.22) 0.0
28221 PCDHGA11 23222 uc003lkp.2 chr5 140800537 140892548 + 1164 86.22 1.55 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28221 PCDHGA11 23222 uc003lkq.2 chr5 140800537 140892548 + 1164 86.22 0.21 0 50.81 E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 20 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28221 chr5 140801378 140801378 phastConsElements100way lod=18 score:280, srow:7331760
28221 chr5 140801380 140801381 phastConsElements100way lod=18 score:280, srow:7331761
28221 chr5 140801396 140801396 phastConsElements100way lod=18 score:280, srow:7331763
28221 chr5 140801426 140801426 phastConsElements100way lod=18 score:280, srow:7331767
28221 chr5 140801432 140801432 phastConsElements100way lod=18 score:280, srow:7331768
28221 chr5 140801480 140801480 phastConsElements100way lod=18 score:280, srow:7331775
28221 chr5 140801486 140801486 phastConsElements100way lod=18 score:280, srow:7331776
28221 chr5 140801549 140801549 phastConsElements100way lod=18 score:280, srow:7331785
28221 chr5 140801695 140801696 phastConsElements100way lod=18 score:280, srow:7331804
28221 chr5 140801699 140801699 phastConsElements100way lod=18 score:280, srow:7331805
28221 chr5 140800885 140800886 phastConsElements100way lod=19 score:285, srow:7331697
28221 chr5 140801311 140801312 phastConsElements100way lod=19 score:285, srow:7331754
28221 chr5 140801251 140801252 phastConsElements100way lod=20 score:290, srow:7331745
28221 chr5 140801384 140801387 phastConsElements100way lod=20 score:290, srow:7331762
28221 chr5 140800626 140800629 phastConsElements100way lod=21 score:295, srow:7331693
28221 chr5 140801365 140801366 phastConsElements100way lod=22 score:300, srow:7331758
28221 chr5 140801455 140801456 phastConsElements100way lod=22 score:300, srow:7331773
28221 chr5 140801587 140801588 phastConsElements100way lod=22 score:300, srow:7331789
28221 chr5 140801620 140801624 phastConsElements100way lod=22 score:300, srow:7331796
28221 chr5 140801158 140801159 phastConsElements100way lod=23 score:304, srow:7331732
28221 chr5 140801402 140801402 phastConsElements100way lod=23 score:304, srow:7331765
28221 chr5 140800378 140801037 wgEncodeRegTfbsClusteredV3 MTA3 score:306, expCount:1, expNums:95, expScores:306, srow:3333274
28221 chr5 140801017 140801021 phastConsElements100way lod=24 score:308, srow:7331713
28221 chr5 140801161 140801162 phastConsElements100way lod=24 score:308, srow:7331733
28221 chr5 140801536 140801537 phastConsElements100way lod=24 score:308, srow:7331783

Omics Overlaps

Dmrid Omic Set Data Plot
28221 cellmeth_recounts PrEC: 5, LNCaP: 18, DU145: 70
28221 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=220, Event=Up, log2FC=Inf, padj=0.000941091010072773
28221 cellmeth_diffreps_PrECvsDU145 A=1, B=17, Length=300, Event=Up, log2FC=4.09, padj=0.00138789698671783
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864
28221 cellmeth_diffreps_LNCaPvsDU145 A=0, B=15.9, Length=260, Event=Up, log2FC=Inf, padj=0.000457622302526381
28221 cellexp id=ENSG00000081853, name=PCDHGA2, PrEC=36, str=158, LNCaP=143, str=96, DU145=11, str=3
28221 cellexp id=ENSG00000204956, name=PCDHGA1, PrEC=6, str=21, LNCaP=181, str=97, DU145=21, str=2
28221 cellexp id=ENSG00000253305, name=PCDHGB6, PrEC=36, str=69, LNCaP=87, str=56, DU145=42, str=22
28221 cellexp id=ENSG00000253485, name=PCDHGA5, PrEC=4, str=41, LNCaP=162, str=109, DU145=34, str=18
28221 cellexp id=ENSG00000253537, name=PCDHGA7, PrEC=13, str=142, LNCaP=203, str=111, DU145=205, str=106
28221 cellexp id=ENSG00000253731, name=PCDHGA6, PrEC=22, str=128, LNCaP=134, str=106, DU145=54, str=37
28221 cellexp id=ENSG00000253767, name=PCDHGA8, PrEC=7, str=34, LNCaP=303, str=488, DU145=12, str=4
28221 cellexp id=ENSG00000253846, name=PCDHGA10, PrEC=98, str=158, LNCaP=430, str=305, DU145=43, str=31
28221 cellexp id=ENSG00000253873, name=PCDHGA11, PrEC=157, str=176, LNCaP=59, str=31, DU145=18, str=7
28221 cellexp id=ENSG00000253910, name=PCDHGB2, PrEC=9, str=57, LNCaP=166, str=133, DU145=359, str=244
28221 cellexp id=ENSG00000253953, name=PCDHGB4, PrEC=76, str=469, LNCaP=105, str=59, DU145=28, str=16
28221 cellexp id=ENSG00000254122, name=PCDHGB7, PrEC=73, str=160, LNCaP=62, str=35, DU145=94, str=45
28221 cellexp id=ENSG00000254221, name=PCDHGB1, PrEC=13, str=60, LNCaP=234, str=371, DU145=8, str=3
28221 cellexp id=ENSG00000254245, name=PCDHGA3, PrEC=0, str=20, LNCaP=87, str=59, DU145=3, str=0
28221 cellexp id=ENSG00000261934, name=PCDHGA9, PrEC=19, str=28, LNCaP=61, str=20, DU145=46, str=28
28221 cellexp id=ENSG00000262209, name=PCDHGB3, PrEC=13, str=128, LNCaP=76, str=60, DU145=63, str=41
28221 cellexp id=ENSG00000262576, name=PCDHGA4, PrEC=16, str=313, LNCaP=92, str=110, DU145=12, str=9
28221 tcgameth site:cg05870739, B=0.14, L=0.47, H=0.41
28221 tcgameth site:cg06572465, B=0.13, L=0.5, H=0.47
28221 tcgameth site:cg08395122, B=0.42, L=0.56, H=0.56
28221 tcgameth site:cg10679597, B=0.46, L=0.63, H=0.62
28221 tcgameth site:cg13598256, B=0.32, L=0.58, H=0.55
28221 tcgameth site:cg13718539, B=0.33, L=0.58, H=0.54
28221 tcgameth site:cg17857974, B=0.28, L=0.57, H=0.53
28221 tcgameth site:cg18118262, B=0.33, L=0.64, H=0.58
28221 tcgameth site:cg22175873, B=0.35, L=0.61, H=0.59
28221 tcgameth site:cg24954895, B=0.27, L=0.6, H=0.55
28221 tcgaexp gene=PCDHGB4, entrez=8641, pos=chr5:140767452-140892548(+), B=192, L=511, M=249, H=215
28221 tcgaexp gene=PCDHGA8, entrez=9708, pos=chr5:140767452-140892548(+), B=35, L=193, M=48, H=49
28221 tcgaexp gene=PCDHGB7, entrez=56099, pos=chr5:140797214-140892548(+), B=647, L=445, M=489, H=421
28221 tcgaexp gene=PCDHGB6, entrez=56100, pos=chr5:140787770-140892548(+), B=275, L=222, M=268, H=231
28221 tcgaexp gene=PCDHGB5, entrez=56101, pos=chr5:140777695-140892548(+), B=534, L=942, M=758, H=789
28221 tcgaexp gene=PCDHGB3, entrez=56102, pos=chr5:140749962-140892548(+), B=43, L=92, M=60, H=110
28221 tcgaexp gene=PCDHGB2, entrez=56103, pos=chr5:140739703-140892548(+), B=208, L=477, M=456, H=948
28221 tcgaexp gene=PCDHGB1, entrez=56104, pos=chr5:140729828-140892548(+), B=119, L=500, M=401, H=479
28221 tcgaexp gene=PCDHGA11, entrez=56105, pos=chr5:140800537-140892548(+), B=92, L=85, M=109, H=97
28221 tcgaexp gene=PCDHGA10, entrez=56106, pos=chr5:140792743-140892548(+), B=357, L=586, M=404, H=516
28221 tcgaexp gene=PCDHGA9, entrez=56107, pos=chr5:140782520-140892548(+), B=240, L=145, M=152, H=117
28221 tcgaexp gene=PCDHGA7, entrez=56108, pos=chr5:140762467-140892548(+), B=163, L=424, M=275, H=247
28221 tcgaexp gene=PCDHGA6, entrez=56109, pos=chr5:140753651-140892548(+), B=169, L=192, M=147, H=217
28221 tcgaexp gene=PCDHGA5, entrez=56110, pos=chr5:140743898-140892548(+), B=201, L=783, M=537, H=1529
28221 tcgaexp gene=PCDHGA4, entrez=56111, pos=chr5:140734768-140892548(+), B=157, L=356, M=224, H=321
28221 tcgaexp gene=PCDHGA3, entrez=56112, pos=chr5:140723601-140892548(+), B=92, L=232, M=124, H=192
28221 tcgaexp gene=PCDHGA2, entrez=56113, pos=chr5:140718354-140892548(+), B=236, L=401, M=276, H=511
28221 tcgaexp gene=PCDHGA1, entrez=56114, pos=chr5:140710252-140892548(+), B=38, L=108, M=76, H=136