DMR Stats
Positionchr1:1871051-1871200 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesC1orf222 (11682bp away)
ANODEV p-value0.000778236166161
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
17 chr1 1871099 1871108 tfbsConsSites V$GATA1_01 score:936, zScore:1.66, srow:2786
17 chr1 1871099 1871108 tfbsConsSites V$GATA2_01 score:943, zScore:1.77, srow:2787
17 chr1 1871046 1871086 phastConsElements100way lod=304 score:559, srow:9092
17 chr1 1871090 1871091 phastConsElements100way lod=18 score:280, srow:9093
17 chr1 1871097 1871097 phastConsElements100way lod=13 score:247, srow:9094
17 chr1 1871101 1871103 phastConsElements100way lod=22 score:300, srow:9095
17 chr1 1871106 1871136 phastConsElements100way lod=239 score:536, srow:9096
17 chr1 1871144 1871161 phastConsElements100way lod=109 score:458, srow:9097
17 chr1 1871163 1871173 phastConsElements100way lod=108 score:457, srow:9098
17 chr1 1871175 1871175 phastConsElements100way lod=14 score:255, srow:9099
17 chr1 1871178 1871179 phastConsElements100way lod=34 score:343, srow:9100
17 chr1 1871181 1871185 phastConsElements100way lod=48 score:377, srow:9101
17 chr1 1871187 1871191 phastConsElements100way lod=51 score:383, srow:9102
17 chr1 1871194 1871196 phastConsElements100way lod=16 score:268, srow:9103
17 chr1 1871199 1871200 phastConsElements100way lod=33 score:340, srow:9104
17 chr1 1870716 1872715 cpgShelf values(x.gr)[overs$srow, ]:131
  • 16 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
17 cellmeth_recounts PrEC: 41, LNCaP: 3, DU145: 1
17 cellmeth_diffreps_PrECvsLNCaP A=119, B=4, Length=640, Event=Down, log2FC=-4.89, padj=0
17 cellmeth_diffreps_PrECvsDU145 A=121, B=2, Length=700, Event=Down, log2FC=-5.92, padj=0
17 cellexp id=ENSG00000142609, name=C1orf222, PrEC=0, str=0, LNCaP=13, str=6, DU145=23, str=8
17 tcgameth site:cg08639799, B=0.69, L=0.64, H=0.61
17 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
17 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305