DMR Stats
Positionchr1:1297151-1297300 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesMXRA8 (0bp away)
ANODEV p-value0.0244281802858
FrequenciesBenign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
9 MXRA8 62 uc001afa.3 chr1 1288071 1297157 - 7 4.67 2.9 0 100.0 E1 (4.67), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
9 chr1 1297166 1297350 wgEncodeRegDnaseClusteredV2 2 score:240, srow:599
9 chr1 1296828 1297311 wgEncodeRegTfbsClusteredV3 SETDB1 score:156, expCount:1, expNums:533, expScores:156, srow:3233
9 chr1 1297285 1297704 wgEncodeRegTfbsClusteredV3 TAF1 score:277, expCount:1, expNums:199, expScores:277, srow:3234
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
9 cellmeth_recounts PrEC: 41, LNCaP: 16, DU145: 3
9 cellmeth_diffreps_PrECvsLNCaP A=504, B=105, Length=1220, Event=Down, log2FC=-2.26, padj=0
9 cellmeth_diffreps_PrECvsDU145 A=504, B=31, Length=1260, Event=Down, log2FC=-4.02, padj=0
9 cellexp id=ENSG00000162576, name=MXRA8, PrEC=509, str=842, LNCaP=4612, str=1264, DU145=911, str=483
9 tcgameth site:cg21165029, B=0.61, L=0.56, H=0.58
9 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
9 tcgaexp gene=MXRA8, entrez=54587, pos=chr1:1288071-1297157(-), B=2112, L=2487, M=2032, H=2187
9 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305