DMR Stats
Positionchr1:1490901-1491050 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesSSU72 (0bp away)
ANODEV p-value0.0292169518798
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
13 SSU72 74 uc001agd.3 chr1 1477053 1510262 - 150 100.0 0.42 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
13 SSU72 74 uc009vkg.1 chr1 1478560 1510262 - 150 100.0 1.67 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
13 chr1 1490621 1491129 wgEncodeRegTfbsClusteredV3 POLR2A score:392, expCount:1, expNums:105, expScores:392, srow:4172
13 chr1 1489795 1491794 cpgShore values(x.gr)[overs$srow, ]:175
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
13 cellmeth_recounts PrEC: 144, LNCaP: 58, DU145: 12
13 cellmeth_diffreps_PrECvsLNCaP A=262, B=55, Length=660, Event=Down, log2FC=-2.25, padj=0
13 cellmeth_diffreps_PrECvsDU145 A=262, B=13, Length=680, Event=Down, log2FC=-4.33, padj=0
13 cellmeth_diffreps_LNCaPvsDU145 A=50.25, B=8.42, Length=400, Event=Down, log2FC=-2.58, padj=2.5183541234433e-06
13 cellexp id=ENSG00000160075, name=SSU72, PrEC=6250, str=3004, LNCaP=7955, str=8795, DU145=3456, str=3590
13 tcgameth site:cg10987926, B=0.94, L=0.94, H=0.93
13 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
13 tcgaexp gene=SSU72, entrez=29101, pos=chr1:1477053-1510262(-), B=6883, L=8353, M=8488, H=7643
13 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305