DMR Stats
Positionchr1:2064001-2064150 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesPRKCZ (0bp away)
ANODEV p-value0.0154791125519
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
19 PRKCZ 94 uc001aiq.3 chr1 1981909 2116834 + 150 100.0 0.58 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) 0.0
19 PRKCZ 94 uc001air.3 chr1 2005086 2116834 + 150 100.0 0.58 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) 0.0
19 PRKCZ 94 uc010nyw.2 chr1 2005425 2116834 + 150 100.0 0.43 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) 0.0
19 PRKCZ 94 uc001ais.3 chr1 2036155 2116834 + 150 100.0 0.43 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
19 chr1 2063701 2064315 wgEncodeRegDnaseClusteredV2 89 score:1000, srow:1239
19 chr1 2063600 2064250 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:67, expNums:0,2,5,12,14,16,18,20,24,35,37,42,44,49,137,174,213,262,463,493,595,597,598,601,603,604,609,615,621,636,638,639,640,641,642,643,644,645,646,650,652,657,658,659,660,661,662,663,665,667,668,669,671,672,673,674,675,676,677,678,679,681,682,684,687,688,689, expScores:175,132,650,404,133,380,179,144,138,336,731,531,806,98,573,733,901,407,1000,1000,268,1000,1000,119,387,538,311,233,1000,818,150,474,511,759,1000,1000,568,597,1000,132,211,691,702,1000,477,798,1000,110,328,370,535,491,156,602,976,809,531,759,293,688,852,365,1000,419,684,215,247, srow:6141
19 chr1 2063632 2064071 wgEncodeRegTfbsClusteredV3 MYC score:193, expCount:1, expNums:489, expScores:193, srow:6143
19 chr1 2063649 2064084 wgEncodeRegTfbsClusteredV3 UBTF score:154, expCount:1, expNums:549, expScores:154, srow:6144
19 chr1 2063662 2064031 wgEncodeRegTfbsClusteredV3 MAZ score:256, expCount:1, expNums:512, expScores:256, srow:6146
19 chr1 2063680 2064003 wgEncodeRegTfbsClusteredV3 E2F6 score:144, expCount:1, expNums:215, expScores:144, srow:6147
19 chr1 2063822 2065492 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:7, expNums:32,147,229,465,524,525,577, expScores:177,264,516,1000,189,182,202, srow:6152
19 chr1 2064005 2064284 wgEncodeRegTfbsClusteredV3 FOS score:401, expCount:3, expNums:557,558,559, expScores:275,401,194, srow:6153
19 chr1 2064025 2064624 wgEncodeRegTfbsClusteredV3 CTBP2 score:126, expCount:1, expNums:348, expScores:126, srow:6154
19 chr1 2064036 2064345 wgEncodeRegTfbsClusteredV3 E2F4 score:246, expCount:1, expNums:562, expScores:246, srow:6155
19 chr1 2063745 2064195 oreganno OREG0013004 id:OREG0013004, srow:23
19 chr1 2063783 2064052 cpgIsland CpG: 20 length:270, cpgNum:20, gcNum:171, perCpg:14.8, perGc:63.3, obsExp:0.77, srow:165
19 chr1 2064053 2064628 cpgShore values(x.gr)[overs$srow, ]:264
  • 13 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
19 cellmeth_recounts PrEC: 49, LNCaP: 4, DU145: 1
19 cellmeth_diffreps_PrECvsLNCaP A=108, B=7, Length=600, Event=Down, log2FC=-3.95, padj=0
19 cellmeth_diffreps_PrECvsDU145 A=100, B=11, Length=460, Event=Down, log2FC=-3.18, padj=0
19 cellexp id=ENSG00000067606, name=PRKCZ, PrEC=1187, str=1283, LNCaP=1606, str=1028, DU145=964, str=723
19 tcgameth site:cg25845463, B=0.69, L=0.76, H=0.72
19 tcgaexp gene=PRKCZ, entrez=5590, pos=chr1:1981909-2116834(+), B=1809, L=2383, M=2268, H=1943
19 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
19 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305