DMR Stats
Positionchr1:1154451-1154700 (View on UCSC)
Width250bp
Genomic Contextexon
Nearest GenesSDF4 (0bp away)
ANODEV p-value0.00192780291335
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
4 SDF4 51 uc001adg.3 chr1 1152288 1156731 - 250 100.0 3.87 1 0.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0) 0.0
4 SDF4 51 uc001adh.4 chr1 1152288 1167447 - 250 100.0 1.4 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
4 SDF4 51 uc001adi.4 chr1 1152288 1167447 - 250 100.0 3.26 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
4 SDF4 51 uc009vjw.3 chr1 1152288 1167447 - 250 100.0 0.8 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
4 chr1 1154420 1156419 cpgShore values(x.gr)[overs$srow, ]:97
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
4 cellmeth_recounts PrEC: 29, LNCaP: 96, DU145: 10
4 cellmeth_diffreps_PrECvsDU145 A=633, B=27, Length=1120, Event=Down, log2FC=-4.55, padj=0
4 cellmeth_diffreps_PrECvsDU145 A=801, B=21, Length=1840, Event=Down, log2FC=-5.25, padj=0
4 cellmeth_diffreps_LNCaPvsDU145 A=5225.49, B=78.57, Length=5280, Event=Down, log2FC=-6.06, padj=0
4 cellexp id=ENSG00000078808, name=SDF4, PrEC=8539, str=17158, LNCaP=12900, str=10663, DU145=8047, str=7983
4 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
4 tcgaexp gene=SDF4, entrez=51150, pos=chr1:1152288-1167447(-), B=9386, L=11625, M=11248, H=9757
4 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305