DMR Stats
Positionchr1:1474301-1474500 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesTMEM240 (0bp away)
ANODEV p-value0.0119197846413
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
12 TMEM240 73 uc009vkf.3 chr1 1470158 1475740 - 200 100.0 0.42 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
12 chr1 1474186 1474555 wgEncodeRegDnaseClusteredV2 10 score:523, srow:737
12 chr1 1474208 1474411 wgEncodeRegTfbsClusteredV3 SPI1 score:136, expCount:1, expNums:230, expScores:136, srow:4141
12 chr1 1474396 1474418 tfbsConsSites V$OCT1_04 score:845, zScore:2.72, srow:1853
12 chr1 1474397 1474406 tfbsConsSites V$HMX1_01 score:827, zScore:1.96, srow:1854
12 chr1 1474404 1474418 tfbsConsSites V$OCT1_02 score:893, zScore:2.73, srow:1855
12 chr1 1474444 1474461 tfbsConsSites V$FOXJ2_01 score:904, zScore:2.09, srow:1856
12 chr1 1474445 1474460 tfbsConsSites V$FREAC7_01 score:883, zScore:2.25, srow:1857
12 chr1 1474446 1474457 tfbsConsSites V$HFH1_01 score:910, zScore:2.52, srow:1858
12 chr1 1474446 1474458 tfbsConsSites V$HFH3_01 score:920, zScore:2.12, srow:1859
12 chr1 1474455 1474471 tfbsConsSites V$YY1_01 score:867, zScore:1.82, srow:1860
12 chr1 1474466 1474481 tfbsConsSites V$FREAC7_01 score:852, zScore:1.74, srow:1861
12 chr1 1474468 1474480 tfbsConsSites V$HFH3_01 score:929, zScore:2.27, srow:1862
12 chr1 1474372 1474374 phastConsElements100way lod=14 score:255, srow:7052
12 chr1 1474394 1474457 phastConsElements100way lod=239 score:536, srow:7053
12 chr1 1474460 1474468 phastConsElements100way lod=31 score:333, srow:7054
12 chr1 1474470 1474514 phastConsElements100way lod=96 score:445, srow:7055
12 chr1 1473343 1474962 cpgShore values(x.gr)[overs$srow, ]:171
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
12 cellmeth_recounts PrEC: 303, LNCaP: 1307, DU145: 18
12 cellmeth_diffreps_PrECvsLNCaP A=2318, B=9570, Length=6220, Event=Up, log2FC=2.05, padj=0
12 cellmeth_diffreps_PrECvsDU145 A=476, B=17, Length=680, Event=Down, log2FC=-4.81, padj=0
12 cellmeth_diffreps_LNCaPvsDU145 A=11675.04, B=164.63, Length=9520, Event=Down, log2FC=-6.15, padj=0
12 cellexp id=ENSG00000205090, name=TMEM240, PrEC=3, str=11, LNCaP=25, str=15, DU145=6, str=0
12 tcgameth site:cg16001723, B=0.92, L=0.92, H=0.92
12 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
12 tcgaexp gene=TMEM240, entrez=339453, pos=chr1:1470158-1475740(-), B=71, L=79, M=47, H=42
12 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305