DMR Stats | |
---|---|
Position | chr1:1674051-1674250 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | SLC35E2B, SLC35E2 (0bp away) |
ANODEV p-value | 0.00615047926469 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15 | SLC35E2B | 82 | uc001ahh.4 | chr1 | 1592939 | 1677438 | - | 200 | 100.0 | 0.58 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
15 | SLC35E2 | 85 | uc001ahy.3 | chr1 | 1656277 | 1677438 | - | 200 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
15 | SLC35E2 | 85 | uc001aia.2 | chr1 | 1658824 | 1677438 | - | 200 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
15 | chr1 | 1673102 | 1674885 | cpgShelf | — | values(x.gr)[overs$srow, ]:118 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
15 | cellmeth_recounts | PrEC: 60, LNCaP: 6, DU145: 0 | |
15 | cellmeth_diffreps_PrECvsLNCaP | A=90, B=5, Length=400, Event=Down, log2FC=-4.17, padj=0 | |
15 | cellmeth_diffreps_PrECvsDU145 | A=90, B=0, Length=460, Event=Down, log2FC=-Inf, padj=0 | |
15 | cellexp | id=ENSG00000215790, name=SLC35E2, PrEC=72, str=98, LNCaP=209, str=93, DU145=178, str=72 | |
15 | tcgaexp | gene=SLC35E2, entrez=9906, pos=chr1:1656277-1677438(-), B=144, L=188, M=179, H=195 | |
15 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
15 | tcgaexp | gene=SLC35E2B, entrez=728661, pos=chr1:1590988-1677438(-), B=5059, L=6323, M=6759, H=6487 | |
15 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |