DMR Stats
Positionchr1:980201-980400 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesAGRN (0bp away)
ANODEV p-value0.0129965809248
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
3 AGRN 37 uc001ack.2 chr1 955503 991499 + 200 100.0 5.69 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (100), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
3 chr1 975497 980305 cpgIsland CpG: 351 length:4809, cpgNum:351, gcNum:3126, perCpg:14.6, perGc:65, obsExp:0.69, srow:30
3 chr1 980306 981068 cpgShore values(x.gr)[overs$srow, ]:53
3 chr1 980208 980222 tfbsConsSites V$TST1_01 score:844, zScore:1.93, srow:363
3 chr1 980186 980475 wgEncodeRegDnaseClusteredV2 3 score:399, srow:255
3 chr1 980214 980509 wgEncodeRegTfbsClusteredV3 CEBPB score:293, expCount:4, expNums:378,426,462,477, expScores:241,293,280,247, srow:1439
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
3 cellmeth_recounts PrEC: 149, LNCaP: 272, DU145: 9
3 cellmeth_diffreps_PrECvsDU145 A=3324, B=86, Length=3880, Event=Down, log2FC=-5.27, padj=0
3 cellmeth_diffreps_LNCaPvsDU145 A=5874.4, B=133.76, Length=7340, Event=Down, log2FC=-5.46, padj=0
3 cellexp id=ENSG00000188157, name=AGRN, PrEC=67643, str=85402, LNCaP=9183, str=4748, DU145=54537, str=32788
3 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
3 tcgaexp gene=AGRN, entrez=375790, pos=chr1:955503-991499(+), B=8608, L=11991, M=10872, H=10879
3 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305