DMR Stats
Positionchr1:1276551-1276750 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesDVL1 (0bp away)
ANODEV p-value0.000190643872004
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
8 DVL1 61 uc001aer.4 chr1 1270658 1284492 - 200 100.0 1.74 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
8 chr1 1274635 1276634 cpgShelf values(x.gr)[overs$srow, ]:67
8 chr1 1276069 1276790 wgEncodeRegTfbsClusteredV3 POLR2A score:368, expCount:5, expNums:61,105,192,445,527, expScores:368,358,225,86,156, srow:3048
8 chr1 1276194 1276717 wgEncodeRegTfbsClusteredV3 HDAC1 score:175, expCount:1, expNums:26, expScores:175, srow:3052
8 chr1 1276239 1276562 wgEncodeRegTfbsClusteredV3 ZEB1 score:187, expCount:1, expNums:121, expScores:187, srow:3053
8 chr1 1276388 1276691 wgEncodeRegTfbsClusteredV3 TCF3 score:132, expCount:1, expNums:117, expScores:132, srow:3054
8 chr1 1276579 1277174 wgEncodeRegTfbsClusteredV3 NFATC1 score:332, expCount:1, expNums:96, expScores:332, srow:3055
8 chr1 1276750 1277059 wgEncodeRegTfbsClusteredV3 SUZ12 score:114, expCount:1, expNums:358, expScores:114, srow:3056
  • 7 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
8 cellmeth_recounts PrEC: 432, LNCaP: 241, DU145: 61
8 cellmeth_diffreps_PrECvsLNCaP A=1425, B=411, Length=1620, Event=Down, log2FC=-1.79, padj=0
8 cellmeth_diffreps_PrECvsDU145 A=1523, B=110, Length=1920, Event=Down, log2FC=-3.79, padj=0
8 cellmeth_diffreps_LNCaPvsDU145 A=514.21, B=102.9, Length=1900, Event=Down, log2FC=-2.32, padj=0
8 cellexp id=ENSG00000107404, name=DVL1, PrEC=11505, str=6807, LNCaP=10517, str=5394, DU145=5106, str=3401
8 tcgaexp gene=DVL1, entrez=1855, pos=chr1:1270658-1284492(-), B=3232, L=4637, M=4620, H=4767
8 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
8 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305