DMR 38090 chr5:140011801-140012100 (300bp)
| DMR Stats | |
|---|---|
| Position | chr5:140011801-140012100 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | CD14 (0bp away) |
| ANODEV p-value | 7.39764043758e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38090 | CD14 | 23185 | uc003lgi.2 | chr5 | 140011313 | 140013035 | - | 300 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
| 38090 | CD14 | 23185 | uc003lgj.2 | chr5 | 140011313 | 140013286 | - | 300 | 100.0 | 0.81 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) | 100.0 |
| 38090 | CD14 | 23185 | uc021yej.1 | chr5 | 140011313 | 140013286 | - | 300 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) | 100.0 |
| 38090 | CD14 | 23185 | uc021yek.1 | chr5 | 140011313 | 140013286 | - | 300 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) | 100.0 |
| 38090 | CD14 | 23185 | uc021yel.1 | chr5 | 140011443 | 140012573 | - | 300 | 100.0 | 0.21 | 0 | 9.0 | E1 (100) | 100.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38090 | chr5 | 140012044 | 140012046 | phastConsElements100way | lod=15 | score:262, srow:7314892 |
| 38090 | chr5 | 140012051 | 140012055 | phastConsElements100way | lod=23 | score:304, srow:7314893 |
| 38090 | chr5 | 140012060 | 140012078 | phastConsElements100way | lod=47 | score:375, srow:7314894 |
| 38090 | chr5 | 140012087 | 140012091 | phastConsElements100way | lod=21 | score:295, srow:7314895 |
| 38090 | chr5 | 140011824 | 140011847 | tfbsConsSites | V$COMP1_01 | score:787, zScore:1.73, srow:4252913 |
| 38090 | chr5 | 140011829 | 140011856 | tfbsConsSites | V$PAX5_01 | score:794, zScore:2.17, srow:4252914 |
| 38090 | chr5 | 140012029 | 140012042 | tfbsConsSites | V$CEBPA_01 | score:966, zScore:3.38, srow:4252915 |
| 38090 | chr5 | 140012029 | 140012042 | tfbsConsSites | V$CEBPB_02 | score:872, zScore:2.17, srow:4252916 |
| 38090 | chr5 | 140011601 | 140013095 | wgEncodeRegDnaseClusteredV2 | 113 | score:1000, srow:974195 |
| 38090 | chr5 | 140011552 | 140012830 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:400, expCount:2, expNums:21,36, expScores:322,317, srow:3331606 |
| 38090 | chr5 | 140011851 | 140012160 | wgEncodeRegTfbsClusteredV3 | E2F4 | score:175, expCount:1, expNums:562, expScores:175, srow:3331607 |
| 38090 | chr5 | 140011894 | 140012169 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:151, expCount:1, expNums:566, expScores:151, srow:3331608 |
| 38090 | chr5 | 140011916 | 140012225 | wgEncodeRegTfbsClusteredV3 | MYC | score:245, expCount:1, expNums:560, expScores:245, srow:3331609 |
| 38090 | chr5 | 140011922 | 140012291 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:382, expCount:1, expNums:109, expScores:382, srow:3331610 |
| 38090 | chr5 | 140012004 | 140012243 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:256, expCount:1, expNums:87, expScores:256, srow:3331611 |
| 38090 | chr5 | 140012041 | 140012476 | wgEncodeRegTfbsClusteredV3 | MAX | score:241, expCount:1, expNums:296, expScores:241, srow:3331612 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38090 | cellmeth_recounts | PrEC: 0, LNCaP: 24, DU145: 18 |  |
| 38090 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=21, Length=380, Event=Up, log2FC=Inf, padj=4.02459409075954e-06 |  |
| 38090 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=38, Length=600, Event=Up, log2FC=Inf, padj=3.80001230326287e-11 |  |
| 38090 | cellexp | id=ENSG00000170458, name=CD14, PrEC=67, str=53, LNCaP=5, str=3, DU145=82, str=21 |  |
| 38090 | tcgameth | site:cg02343503, B=0.1, L=0.12, H=0.21 |  |
| 38090 | tcgaexp | gene=CD14, entrez=929, pos=chr5:140011313-140013286(-), B=1646, L=1718, M=1490, H=1430 |  |
| 38090 | pubmed | gene=CD14, G=11192, GP=43, GC=1987, GM=30, GPM=1, GCM=6 |  |