DMR 10 chr1:1409551-1409700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:1409551-1409700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | ATAD3B (0bp away) |
| ANODEV p-value | 0.000595484487627 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10 | ATAD3B | 71 | uc001afv.3 | chr1 | 1407164 | 1431582 | + | 150 | 100.0 | 0.56 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10 | chr1 | 1407822 | 1409821 | cpgShore | — | values(x.gr)[overs$srow, ]:154 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10 | cellmeth_recounts | PrEC: 11, LNCaP: 16, DU145: 24 |  |
| 10 | cellexp | id=ENSG00000160072, name=ATAD3B, PrEC=2388, str=2255, LNCaP=1488, str=1361, DU145=856, str=1152 |  |
| 10 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10 | tcgaexp | gene=ATAD3B, entrez=83858, pos=chr1:1407164-1444689(+), B=521, L=737, M=722, H=785 |  |
| 10 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |