DMR 1001 chr2:72371151-72371350 (200bp)

DMR Stats
Positionchr2:72371151-72371350 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesCYP26B1 (0bp away)
ANODEV p-value0.00549494552297
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1001 CYP26B1 16494 uc002sih.2 chr2 72356367 72374991 - 200 100.0 0.06 0 0.0 E1 (0), I1 (4.5), E2 (96), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
1001 CYP26B1 16494 uc010yra.1 chr2 72356367 72371544 - 200 100.0 0.06 0 100.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
1001 CYP26B1 16494 uc010yrb.2 chr2 72356367 72374991 - 200 100.0 0.06 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1001 chr2 72371046 72372815 wgEncodeRegDnaseClusteredV2 67 score:1000, srow:629293
1001 chr2 72370412 72371564 wgEncodeRegTfbsClusteredV3 EZH2 score:553, expCount:5, expNums:6,36,38,40,43, expScores:265,304,195,239,280, srow:2212649
1001 chr2 72370983 72371292 wgEncodeRegTfbsClusteredV3 SUZ12 score:94, expCount:1, expNums:358, expScores:94, srow:2212650
1001 chr2 72370996 72371391 wgEncodeRegTfbsClusteredV3 POLR2A score:228, expCount:1, expNums:62, expScores:228, srow:2212651
1001 chr2 72371158 72371171 tfbsConsSites V$FAC1_01 score:835, zScore:1.68, srow:2676351
1001 chr2 72371185 72371202 tfbsConsSites V$MIF1_01 score:798, zScore:2.29, srow:2676352
1001 chr2 72371239 72371248 tfbsConsSites V$HSF1_01 score:937, zScore:2.63, srow:2676353
1001 chr2 72371254 72371272 tfbsConsSites V$PAX2_01 score:797, zScore:2.29, srow:2676354
1001 chr2 72371256 72371271 tfbsConsSites V$AHRARNT_01 score:849, zScore:2.05, srow:2676355
1001 chr2 72371299 72371315 tfbsConsSites V$RFX1_01 score:832, zScore:1.96, srow:2676356
1001 chr2 72371305 72371319 tfbsConsSites V$CDPCR3_01 score:842, zScore:2.85, srow:2676357
1001 chr2 72371316 72371330 tfbsConsSites V$E2F_01 score:800, zScore:2.52, srow:2676358
1001 chr2 72371192 72371192 cosmic COSM575924 srow:654476
1001 chr2 72371201 72371201 cosmic COSM443179 srow:654477
1001 chr2 72371204 72371204 cosmic COSM1409334 srow:654478
1001 chr2 72371229 72371229 cosmic COSM1409335 srow:654479
1001 chr2 72371240 72371240 cosmic COSM1022703 srow:654480
1001 chr2 72371249 72371249 cosmic COSM1306976 srow:654481
1001 chr2 72371254 72371254 cosmic COSM117004 srow:654482
1001 chr2 72371271 72371271 cosmic COSM1022704 srow:654483
1001 chr2 72371290 72371290 cosmic COSM1249571 srow:654484
1001 chr2 72371317 72371317 cosmic COSM1532597 srow:654485
1001 chr2 72371321 72371321 cosmic COSM1326978 srow:654486
1001 chr2 72371146 72371158 phastConsElements100way lod=102 score:451, srow:4626527
1001 chr2 72371161 72371174 phastConsElements100way lod=122 score:469, srow:4626528
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  • 25 of 42 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
1001 cellmeth_recounts PrEC: 263, LNCaP: 277, DU145: 10
1001 cellmeth_diffreps_PrECvsLNCaP A=410, B=232, Length=400, Event=Down, log2FC=-0.82, padj=1.4241054042039e-10
1001 cellmeth_diffreps_PrECvsDU145 A=459, B=11, Length=900, Event=Down, log2FC=-5.38, padj=0
1001 cellmeth_diffreps_LNCaPvsDU145 A=506.73, B=27.13, Length=2040, Event=Down, log2FC=-4.22, padj=0
1001 cellexp id=ENSG00000003137, name=CYP26B1, PrEC=581, str=786, LNCaP=12, str=7, DU145=705, str=507
1001 tcgameth site:cg22856324, B=0.7, L=0.8, H=0.78
1001 tcgameth site:cg22979783, B=0.65, L=0.77, H=0.75
1001 tcgaexp gene=CYP26B1, entrez=56603, pos=chr2:72356367-72374991(-), B=554, L=157, M=151, H=237