DMR 10115 chr1:1533651-1533850 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:1533651-1533850 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | C1orf233 (0bp away) |
| ANODEV p-value | 0.0247390654786 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10115 | C1orf233 | 76 | uc021oes.1 | chr1 | 1533388 | 1535476 | - | 200 | 100.0 | 0.31 | 0 | 0.0 | E1 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10115 | chr1 | 1533686 | 1536875 | wgEncodeRegDnaseClusteredV2 | 88 | score:1000, srow:782 |
| 10115 | chr1 | 1533844 | 1533861 | tfbsConsSites | V$CMYB_01 | score:790, zScore:1.69, srow:1943 |
| 10115 | chr1 | 1532332 | 1534331 | cpgShore | — | values(x.gr)[overs$srow, ]:180 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10115 | cellmeth_recounts | PrEC: 25, LNCaP: 224, DU145: 3 |  |
| 10115 | cellmeth_diffreps_PrECvsLNCaP | A=233, B=2376, Length=2160, Event=Up, log2FC=3.35, padj=0 |  |
| 10115 | cellmeth_diffreps_PrECvsDU145 | A=228, B=14, Length=1380, Event=Down, log2FC=-4.03, padj=0 |  |
| 10115 | cellmeth_diffreps_LNCaPvsDU145 | A=2538.98, B=17.77, Length=2140, Event=Down, log2FC=-7.16, padj=0 |  |
| 10115 | cellexp | id=ENSG00000228594, name=C1orf233, PrEC=542, str=322, LNCaP=5117, str=2541, DU145=1411, str=887 |  |
| 10115 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10115 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |