DMR 10143 chr1:3679551-3679750 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:3679551-3679750 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | CCDC27 (0bp away) |
| ANODEV p-value | 0.0468766675501 |
| Frequencies | Benign: 6.0 (85.71%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10143 | CCDC27 | 126 | uc001akv.2 | chr1 | 3668965 | 3688209 | + | 200 | 100.0 | 0.99 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (60.5), E7 (39.5), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10143 | chr1 | 3679606 | 3679815 | wgEncodeRegDnaseClusteredV2 | 2 | score:271, srow:2954 |
| 10143 | chr1 | 3679554 | 3680483 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:321, expCount:2, expNums:368,553, expScores:321,159, srow:10458 |
| 10143 | chr1 | 3679750 | 3679750 | cosmic | COSM1686910 | srow:2545 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10143 | cellmeth_recounts | PrEC: 13, LNCaP: 0, DU145: 1 |  |
| 10143 | cellmeth_diffreps_PrECvsLNCaP | A=22, B=0, Length=400, Event=Down, log2FC=-Inf, padj=2.04501321634913e-06 |  |
| 10143 | cellmeth_diffreps_PrECvsDU145 | A=21, B=1, Length=320, Event=Down, log2FC=-4.39, padj=0.000134575124164672 |  |
| 10143 | cellexp | id=ENSG00000162592, name=CCDC27, PrEC=2, str=0, LNCaP=28, str=18, DU145=21, str=1 |  |
| 10143 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10143 | tcgaexp | gene=CCDC27, entrez=148870, pos=chr1:3668965-3688209(+), B=3, L=1, M=1, H=1 |  |
| 10143 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |