DMR 10197 chr1:8394901-8395050 (150bp)

DMR Stats
Positionchr1:8394901-8395050 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesSLC45A1 (0bp away)
ANODEV p-value0.00149816857311
FrequenciesBenign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
10197 SLC45A1 170 uc001apb.3 chr1 8384390 8404227 + 150 100.0 0.08 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
10197 SLC45A1 170 uc001apc.3 chr1 8390198 8404227 + 150 100.0 0.08 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
10197 chr1 8393344 8395343 cpgShore — values(x.gr)[overs$srow, ]:622
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
10197 cellmeth_recounts PrEC: 9, LNCaP: 0, DU145: 1
10197 cellmeth_diffreps_PrECvsLNCaP A=13, B=0, Length=300, Event=Down, log2FC=-Inf, padj=0.000827318446465587
10197 cellmeth_diffreps_PrECvsDU145 A=12, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00174045876043459
10197 cellexp id=ENSG00000162426, name=SLC45A1, PrEC=29, str=12, LNCaP=91, str=48, DU145=221, str=79
10197 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
10197 tcgaexp gene=SLC45A1, entrez=50651, pos=chr1:8384390-8404227(+), B=339, L=314, M=328, H=358
10197 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305