DMR 10209 chr1:9009351-9009550 (200bp)

DMR Stats
Positionchr1:9009351-9009550 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesCA6 (0bp away)
ANODEV p-value0.0115743084236
FrequenciesBenign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
10209 CA6 175 uc001apm.4 chr1 9005893 9035148 + 200 100.0 4.84 0 0.0 E1 (0), I1 (0), E2 (75.5), I2 (25), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
10209 CA6 175 uc009vmn.4 chr1 9005893 9035148 + 200 100.0 0.14 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
10209 CA6 175 uc021ofu.2 chr1 9005893 9012710 + 200 100.0 0.14 1 0.0 E1 (0), I1 (0), E2 (75.5), I2 (25), E3 (0), I3 (0), E4 (0) 0.0
10209 CA6 175 uc031plc.1 chr1 9005893 9034503 + 200 100.0 0.14 0 0.0 E1 (0), I1 (0), E2 (75.5), I2 (25), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
10209 CA6 175 uc031pld.1 chr1 9005893 9035148 + 200 100.0 0.14 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
10209 chr1 9009376 9009391 tfbsConsSites V$HAND1E47_01 score:842, zScore:1.77, srow:16720
10209 chr1 9009496 9009508 tfbsConsSites V$AREB6_01 score:966, zScore:3.09, srow:16721
10209 chr1 9009361 9009361 cosmic COSM136089 srow:4443
10209 chr1 9009374 9009374 cosmic COSM243428 srow:4444
10209 chr1 9009374 9009374 cosmic COSM243427 srow:4445
10209 chr1 9009385 9009385 cosmic COSM266161 srow:4446
10209 chr1 9009385 9009385 cosmic COSM266160 srow:4447
10209 chr1 9009386 9009386 cosmic COSM913045 srow:4448
10209 chr1 9009386 9009386 cosmic COSM913044 srow:4449
10209 chr1 9009428 9009428 cosmic COSM536382 srow:4450
10209 chr1 9009444 9009444 cosmic COSM1599878 srow:4451
10209 chr1 9009444 9009444 cosmic COSM1599877 srow:4452
10209 chr1 9009482 9009482 cosmic COSM1290244 srow:4453
10209 chr1 9009482 9009482 cosmic COSM1290243 srow:4454
10209 chr1 9009355 9009361 phastConsElements100way lod=31 score:333, srow:32854
10209 chr1 9009366 9009367 phastConsElements100way lod=34 score:343, srow:32855
10209 chr1 9009369 9009370 phastConsElements100way lod=22 score:300, srow:32856
10209 chr1 9009372 9009373 phastConsElements100way lod=33 score:340, srow:32857
10209 chr1 9009378 9009385 phastConsElements100way lod=75 score:421, srow:32858
10209 chr1 9009387 9009402 phastConsElements100way lod=95 score:444, srow:32859
10209 chr1 9009411 9009412 phastConsElements100way lod=25 score:312, srow:32860
10209 chr1 9009417 9009424 phastConsElements100way lod=36 score:348, srow:32861
10209 chr1 9009430 9009431 phastConsElements100way lod=30 score:330, srow:32862
10209 chr1 9009438 9009440 phastConsElements100way lod=24 score:308, srow:32863
10209 chr1 9009445 9009445 phastConsElements100way lod=15 score:262, srow:32864
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Omics Overlaps

Dmrid Omic Set Data Plot
10209 cellmeth_recounts PrEC: 1, LNCaP: 1, DU145: 0
10209 cellexp id=ENSG00000131686, name=CA6, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
10209 tcgaexp gene=CA6, entrez=765, pos=chr1:9005893-9035148(+), B=1, L=1, M=2, H=0
10209 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
10209 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305