DMR 10213 chr1:9257351-9257550 (200bp)

DMR Stats
Positionchr1:9257351-9257550 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest Genesmir-34 (14899bp away)
ANODEV p-value0.0153721114202
FrequenciesBenign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
10213 chr1 9257326 9257475 wgEncodeRegDnaseClusteredV2 3 score:109, srow:7456
10213 chr1 9257545 9257563 phastConsElements100way lod=26 score:316, srow:33525
10213 chr1 9256566 9258565 cpgShore — values(x.gr)[overs$srow, ]:645
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
10213 cellmeth_recounts PrEC: 40, LNCaP: 18, DU145: 1
10213 cellmeth_diffreps_PrECvsLNCaP A=61, B=14, Length=400, Event=Down, log2FC=-2.12, padj=1.09898910314318e-06
10213 cellmeth_diffreps_PrECvsDU145 A=61, B=1, Length=540, Event=Down, log2FC=-5.93, padj=0
10213 cellmeth_diffreps_LNCaPvsDU145 A=12.83, B=0, Length=220, Event=Down, log2FC=-Inf, padj=0.00293113488474198
10213 cellexp id=ENSG00000228526, name=RP3-510D11.1, PrEC=3, str=4, LNCaP=4, str=2, DU145=0, str=0
10213 tcgameth site:cg14217990, B=0.8, L=0.73, H=0.73
10213 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
10213 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305