DMR 10236 chr1:10596501-10596650 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:10596501-10596650 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | PEX14 (0bp away) |
| ANODEV p-value | 0.0103439143162 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10236 | PEX14 | 199 | uc001arm.1 | chr1 | 10535003 | 10638484 | + | 150 | 100.0 | 0.1 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
| 10236 | PEX14 | 199 | uc001arn.3 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 10236 | PEX14 | 199 | uc009vmu.1 | chr1 | 10535003 | 10683924 | + | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0) | 0.0 |
| 10236 | PEX14 | 199 | uc009vmv.3 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 10236 | PEX14 | 199 | uc009vmw.3 | chr1 | 10588312 | 10690815 | + | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 10236 | PEX14 | 199 | uc010oam.2 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 10236 | PEX14 | 199 | uc010oan.2 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10236 | chr1 | 10596286 | 10596735 | wgEncodeRegDnaseClusteredV2 | 14 | score:280, srow:8532 |
| 10236 | chr1 | 10596208 | 10596553 | wgEncodeRegTfbsClusteredV3 | CTCF | score:291, expCount:7, expNums:5,609,630,645,659,675,688, expScores:110,158,144,291,136,131,168, srow:27314 |
| 10236 | chr1 | 10596641 | 10596646 | phastConsElements100way | lod=13 | score:247, srow:39224 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10236 | cellmeth_recounts | PrEC: 7, LNCaP: 1, DU145: 0 |  |
| 10236 | cellexp | id=ENSG00000142655, name=PEX14, PrEC=2040, str=2504, LNCaP=1455, str=1052, DU145=1343, str=1366 |  |
| 10236 | tcgaexp | gene=PEX14, entrez=5195, pos=chr1:10535003-10690815(+), B=2169, L=1677, M=1496, H=1299 |  |
| 10236 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10236 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |