DMR 10241 chr1:10713451-10713650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:10713451-10713650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | CASZ1 (0bp away) |
| ANODEV p-value | 0.00403589015301 |
| Frequencies | Benign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10241 | CASZ1 | 200 | uc001aro.4 | chr1 | 10696666 | 10856733 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
| 10241 | CASZ1 | 200 | uc001arp.2 | chr1 | 10707263 | 10856733 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 10241 | CASZ1 | 200 | uc009vmx.2 | chr1 | 10713041 | 10754507 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10241 | chr1 | 10713432 | 10713452 | tfbsConsSites | V$PPARG_01 | score:827, zScore:3.46, srow:20967 |
| 10241 | chr1 | 10713433 | 10713451 | tfbsConsSites | V$HNF4_01 | score:841, zScore:2.3, srow:20968 |
| 10241 | chr1 | 10713435 | 10713454 | tfbsConsSites | V$YY1_02 | score:765, zScore:1.71, srow:20969 |
| 10241 | chr1 | 10713446 | 10713473 | tfbsConsSites | V$PAX5_02 | score:779, zScore:1.96, srow:20970 |
| 10241 | chr1 | 10713537 | 10713565 | tfbsConsSites | V$MYOGNF1_01 | score:737, zScore:1.71, srow:20971 |
| 10241 | chr1 | 10713559 | 10713572 | tfbsConsSites | V$ROAZ_01 | score:788, zScore:2.42, srow:20972 |
| 10241 | chr1 | 10713455 | 10713455 | cosmic | COSM117661 | srow:5663 |
| 10241 | chr1 | 10713525 | 10713525 | cosmic | COSM1497459 | srow:5664 |
| 10241 | chr1 | 10713574 | 10713574 | cosmic | COSM319240 | srow:5665 |
| 10241 | chr1 | 10713628 | 10713628 | cosmic | COSM1199679 | srow:5666 |
| 10241 | chr1 | 10713413 | 10713464 | phastConsElements100way | lod=316 | score:563, srow:40102 |
| 10241 | chr1 | 10713466 | 10713467 | phastConsElements100way | lod=36 | score:348, srow:40103 |
| 10241 | chr1 | 10713469 | 10713470 | phastConsElements100way | lod=34 | score:343, srow:40104 |
| 10241 | chr1 | 10713472 | 10713491 | phastConsElements100way | lod=240 | score:536, srow:40105 |
| 10241 | chr1 | 10713493 | 10713509 | phastConsElements100way | lod=196 | score:516, srow:40106 |
| 10241 | chr1 | 10713511 | 10713512 | phastConsElements100way | lod=33 | score:340, srow:40107 |
| 10241 | chr1 | 10713514 | 10713536 | phastConsElements100way | lod=258 | score:543, srow:40108 |
| 10241 | chr1 | 10713538 | 10713545 | phastConsElements100way | lod=23 | score:304, srow:40109 |
| 10241 | chr1 | 10713547 | 10713550 | phastConsElements100way | lod=29 | score:327, srow:40110 |
| 10241 | chr1 | 10713553 | 10713556 | phastConsElements100way | lod=44 | score:368, srow:40111 |
| 10241 | chr1 | 10713559 | 10713560 | phastConsElements100way | lod=21 | score:295, srow:40112 |
| 10241 | chr1 | 10713562 | 10713563 | phastConsElements100way | lod=25 | score:312, srow:40113 |
| 10241 | chr1 | 10713568 | 10713572 | phastConsElements100way | lod=20 | score:290, srow:40114 |
| 10241 | chr1 | 10713577 | 10713578 | phastConsElements100way | lod=21 | score:295, srow:40115 |
| 10241 | chr1 | 10713583 | 10713587 | phastConsElements100way | lod=20 | score:290, srow:40116 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10241 | cellmeth_recounts | PrEC: 73, LNCaP: 9, DU145: 4 |  |
| 10241 | cellmeth_diffreps_PrECvsLNCaP | A=1458, B=156, Length=1500, Event=Down, log2FC=-3.22, padj=0 |  |
| 10241 | cellmeth_diffreps_PrECvsDU145 | A=1458, B=41, Length=1500, Event=Down, log2FC=-5.15, padj=0 |  |
| 10241 | cellexp | id=ENSG00000130940, name=CASZ1, PrEC=524, str=547, LNCaP=2281, str=1784, DU145=1216, str=750 |  |
| 10241 | cellexp | id=ENSG00000272078, name=RP4-734G22.3, PrEC=38, str=7, LNCaP=75, str=39, DU145=21, str=37 |  |
| 10241 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10241 | tcgaexp | gene=CASZ1, entrez=54897, pos=chr1:10696666-10856733(-), B=4089, L=4912, M=4982, H=5406 |  |
| 10241 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |