DMR Stats | |
---|---|
Position | chr1:10769351-10769550 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | CASZ1 (0bp away) |
ANODEV p-value | 0.0273450976794 |
Frequencies | Benign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
10243 | CASZ1 | 200 | uc001aro.4 | chr1 | 10696666 | 10856733 | - | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
10243 | CASZ1 | 200 | uc001arp.2 | chr1 | 10707263 | 10856733 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
10243 | chr1 | 10769286 | 10769495 | wgEncodeRegDnaseClusteredV2 | 2 | score:360, srow:8708 |
10243 | chr1 | 10769172 | 10769449 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:196, expCount:2, expNums:138,216, expScores:196,182, srow:27662 |
10243 | chr1 | 10769413 | 10769426 | tfbsConsSites | V$CEBPB_01 | score:883, zScore:1.69, srow:21893 |
10243 | chr1 | 10769421 | 10769428 | tfbsConsSites | V$ATF6_01 | score:868, zScore:1.67, srow:21894 |
10243 | chr1 | 10769470 | 10769487 | tfbsConsSites | V$MIF1_01 | score:778, zScore:1.94, srow:21895 |
10243 | chr1 | 10769485 | 10769496 | tfbsConsSites | V$NFKB_C | score:871, zScore:2.2, srow:21896 |
10243 | chr1 | 10769486 | 10769506 | tfbsConsSites | V$STAT1_01 | score:762, zScore:1.78, srow:21897 |
10243 | chr1 | 10769492 | 10769500 | tfbsConsSites | V$STAT_01 | score:903, zScore:1.69, srow:21898 |
10243 | chr1 | 10769499 | 10769512 | tfbsConsSites | V$FOXJ2_02 | score:856, zScore:1.91, srow:21899 |
10243 | chr1 | 10769535 | 10769545 | tfbsConsSites | V$TGIF_01 | score:1000, zScore:3.46, srow:21900 |
10243 | chr1 | 10769355 | 10769357 | phastConsElements100way | lod=16 | score:268, srow:40734 |
10243 | chr1 | 10769400 | 10769431 | phastConsElements100way | lod=150 | score:489, srow:40735 |
10243 | chr1 | 10769434 | 10769655 | phastConsElements100way | lod=2425 | score:765, srow:40736 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
10243 | cellmeth_recounts | PrEC: 57, LNCaP: 6, DU145: 3 | |
10243 | cellmeth_diffreps_PrECvsLNCaP | A=188, B=8, Length=1260, Event=Down, log2FC=-4.55, padj=0 | |
10243 | cellmeth_diffreps_PrECvsDU145 | A=189, B=4, Length=1260, Event=Down, log2FC=-5.56, padj=0 | |
10243 | cellexp | id=ENSG00000130940, name=CASZ1, PrEC=524, str=547, LNCaP=2281, str=1784, DU145=1216, str=750 | |
10243 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
10243 | tcgaexp | gene=CASZ1, entrez=54897, pos=chr1:10696666-10856733(-), B=4089, L=4912, M=4982, H=5406 | |
10243 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |