DMR 103 chr1:10480001-10480200 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:10480001-10480200 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | PGD (0bp away) |
| ANODEV p-value | 0.00352804110374 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103 | PGD | 196 | uc001arc.3 | chr1 | 10459085 | 10480201 | + | 200 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (100) | 100.0 |
| 103 | PGD | 196 | uc010oak.2 | chr1 | 10459085 | 10480201 | + | 200 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) | 100.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 103 | chr1 | 10479916 | 10480191 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:534, expCount:2, expNums:61,62, expScores:317,534, srow:26690 |
| 103 | chr1 | 10480180 | 10480188 | phastConsElements100way | lod=18 | score:280, srow:38540 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 103 | cellmeth_recounts | PrEC: 77, LNCaP: 11, DU145: 13 |  |
| 103 | cellmeth_diffreps_PrECvsLNCaP | A=115, B=9, Length=440, Event=Down, log2FC=-3.68, padj=0 |  |
| 103 | cellmeth_diffreps_PrECvsDU145 | A=145, B=12, Length=800, Event=Down, log2FC=-3.59, padj=0 |  |
| 103 | cellexp | id=ENSG00000142657, name=PGD, PrEC=19264, str=10230, LNCaP=11149, str=11811, DU145=10196, str=7972 |  |
| 103 | tcgameth | site:cg02916418, B=0.74, L=0.78, H=0.77 |  |
| 103 | tcgaexp | gene=PGD, entrez=5226, pos=chr1:10459085-10480201(+), B=4443, L=5002, M=5136, H=5236 |  |
| 103 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 103 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |