DMR 10304 chr1:16817101-16817250 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:16817101-16817250 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | CROCCP3 (0bp away) |
| ANODEV p-value | 0.00153252473065 |
| Frequencies | Benign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10304 | CROCCP3 | 301 | uc001ays.2 | chr1 | 16804750 | 16817579 | - | 150 | 100.0 | 0.19 | 1 | 100.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (92), I3 (8), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 10304 | CROCCP3 | 301 | uc001ayt.2 | chr1 | 16793931 | 16819196 | - | 150 | 100.0 | 0.81 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (92), I5 (8), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10304 | chr1 | 16816846 | 16817515 | wgEncodeRegDnaseClusteredV2 | 14 | score:351, srow:12974 |
| 10304 | chr1 | 16816725 | 16817114 | wgEncodeRegTfbsClusteredV3 | MAX | score:254, expCount:1, expNums:223, expScores:254, srow:43798 |
| 10304 | chr1 | 16816882 | 16817511 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:612, expCount:1, expNums:368, expScores:284, srow:43799 |
| 10304 | chr1 | 16817117 | 16817129 | tfbsConsSites | V$PAX3_01 | score:844, zScore:2.64, srow:34734 |
| 10304 | chr1 | 16817173 | 16817183 | tfbsConsSites | V$NFY_Q6 | score:931, zScore:1.72, srow:34735 |
| 10304 | chr1 | 16817108 | 16817121 | phastConsElements100way | lod=112 | score:461, srow:64095 |
| 10304 | chr1 | 16817123 | 16817133 | phastConsElements100way | lod=81 | score:429, srow:64096 |
| 10304 | chr1 | 16817135 | 16817157 | phastConsElements100way | lod=210 | score:523, srow:64097 |
| 10304 | chr1 | 16817159 | 16817166 | phastConsElements100way | lod=35 | score:345, srow:64098 |
| 10304 | chr1 | 16817168 | 16817175 | phastConsElements100way | lod=85 | score:433, srow:64099 |
| 10304 | chr1 | 16817180 | 16817190 | phastConsElements100way | lod=118 | score:466, srow:64100 |
| 10304 | chr1 | 16817192 | 16817217 | phastConsElements100way | lod=255 | score:542, srow:64101 |
| 10304 | chr1 | 16817225 | 16817250 | phastConsElements100way | lod=250 | score:540, srow:64102 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10304 | cellmeth_recounts | PrEC: 20, LNCaP: 5, DU145: 0 |  |
| 10304 | cellmeth_diffreps_PrECvsLNCaP | A=52, B=6, Length=540, Event=Down, log2FC=-3.12, padj=7.97779218976218e-09 |  |
| 10304 | cellmeth_diffreps_PrECvsDU145 | A=52, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0 |  |
| 10304 | cellexp | id=ENSG00000080947, name=CROCCP3, PrEC=56, str=215, LNCaP=142, str=41, DU145=82, str=33 |  |
| 10304 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10304 | tcgaexp | gene=CROCCP3, entrez=114819, pos=chr1:16793931-16819196(-), B=145, L=125, M=133, H=164 |  |
| 10304 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |