DMR 104 chr1:10509901-10510100 (200bp)

DMR Stats
Positionchr1:10509901-10510100 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesAPITD1-CORT, CORT (0bp away)
ANODEV p-value0.0253035283924
FrequenciesBenign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
104 APITD1-CORT 197 uc001arf.3 chr1 10490159 10512060 + 200 100.0 0.55 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0) 0.0
104 CORT 197 uc001ari.4 chr1 10509776 10512060 + 200 100.0 0.25 0 100.0 E1 (100), I1 (0), E2 (0) 0.0
104 APITD1-CORT 197 uc021ogd.1 chr1 10490159 10512060 + 200 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) 0.0
104 APITD1-CORT 197 uc021ogf.1 chr1 10490804 10512060 + 200 100.0 0.21 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) 0.0
104 APITD1-CORT 197 uc021ogg.1 chr1 10490804 10512060 + 200 100.0 0.28 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) 0.0
104 APITD1-CORT 197 uc031ple.1 chr1 10490159 10512060 + 200 100.0 0.28 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) 0.0
  • 6 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
104 chr1 10509981 10511035 wgEncodeRegDnaseClusteredV2 28 score:413, srow:8459
104 chr1 10509906 10509919 tfbsConsSites V$ELK1_02 score:867, zScore:1.74, srow:19617
104 chr1 10509907 10509916 tfbsConsSites V$CETS1P54_01 score:946, zScore:1.83, srow:19618
104 chr1 10510025 10510032 tfbsConsSites V$NKX25_02 score:947, zScore:2.34, srow:19619
104 chr1 10510083 10510093 tfbsConsSites V$AP1FJ_Q2 score:929, zScore:2.09, srow:19620
104 chr1 10510083 10510097 tfbsConsSites V$TAXCREB_01 score:834, zScore:2.71, srow:19621
104 chr1 10509909 10509915 phastConsElements100way lod=33 score:340, srow:38621
104 chr1 10509936 10509940 phastConsElements100way lod=23 score:304, srow:38622
104 chr1 10509978 10509988 phastConsElements100way lod=22 score:300, srow:38623
104 chr1 10510018 10510039 phastConsElements100way lod=79 score:426, srow:38624
104 chr1 10510060 10510064 phastConsElements100way lod=13 score:247, srow:38625
104 chr1 10510068 10510076 phastConsElements100way lod=31 score:333, srow:38626
104 chr1 10510085 10510092 phastConsElements100way lod=41 score:361, srow:38627
  • 13 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
104 cellmeth_recounts PrEC: 9, LNCaP: 3, DU145: 1
104 cellmeth_diffreps_PrECvsLNCaP A=36, B=0, Length=580, Event=Down, log2FC=-Inf, padj=1.48300123068897e-10
104 cellmeth_diffreps_PrECvsDU145 A=37, B=1, Length=600, Event=Down, log2FC=-5.21, padj=4.91555057723503e-09
104 cellexp id=ENSG00000175279, name=APITD1, PrEC=350, str=36, LNCaP=702, str=470, DU145=267, str=187
104 cellexp id=ENSG00000241563, name=CORT, PrEC=6, str=14, LNCaP=8, str=18, DU145=9, str=2
104 cellexp id=ENSG00000251503, name=APITD1-CORT, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
104 tcgameth site:cg04113348, B=0.89, L=0.88, H=0.87
104 tcgameth site:cg18233538, B=0.92, L=0.91, H=0.91
104 tcgameth site:cg24365837, B=0.9, L=0.9, H=0.88
104 tcgaexp gene=CORT, entrez=1325, pos=chr1:10509776-10512060(+), B=17, L=21, M=23, H=16
104 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
104 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305