DMR 10404 chr1:26060351-26060500 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:26060351-26060500 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | MAN1C1 (0bp away) |
| ANODEV p-value | 0.00238770657053 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10404 | MAN1C1 | 463 | uc001bkm.2 | chr1 | 25943959 | 26111258 | + | 150 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 10404 | MAN1C1 | 463 | uc009vry.1 | chr1 | 25943959 | 26111258 | + | 150 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 2 geness
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10404 | cellmeth_recounts | PrEC: 5, LNCaP: 4, DU145: 12 |  |
| 10404 | cellexp | id=ENSG00000117643, name=MAN1C1, PrEC=5, str=20, LNCaP=172, str=151, DU145=84, str=28 |  |
| 10404 | tcgaexp | gene=MAN1C1, entrez=57134, pos=chr1:25943959-26111258(+), B=2347, L=2196, M=2515, H=2936 |  |
| 10404 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |