DMR 10486 chr1:33775001-33775200 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:33775001-33775200 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | A3GALT2 (0bp away) |
| ANODEV p-value | 0.0221935022621 |
| Frequencies | Benign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10486 | A3GALT2 | 613 | uc031plq.1 | chr1 | 33772367 | 33786699 | - | 200 | 100.0 | 7.82 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10486 | chr1 | 33773105 | 33775104 | cpgShore | — | values(x.gr)[overs$srow, ]:1515 |
| 10486 | chr1 | 33775105 | 33777104 | cpgShelf | — | values(x.gr)[overs$srow, ]:1226 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10486 | cellmeth_recounts | PrEC: 58, LNCaP: 101, DU145: 3 |  |
| 10486 | cellmeth_diffreps_PrECvsDU145 | A=190, B=31, Length=980, Event=Down, log2FC=-2.62, padj=0 |  |
| 10486 | cellmeth_diffreps_LNCaPvsDU145 | A=205.26, B=29, Length=960, Event=Down, log2FC=-2.82, padj=0 |  |
| 10486 | cellexp | id=ENSG00000184389, name=A3GALT2, PrEC=1, str=0, LNCaP=3, str=1, DU145=0, str=1 |  |
| 10486 | cellexp | id=ENSG00000225313, name=RP11-415J8.3, PrEC=13, str=103, LNCaP=12, str=12, DU145=9, str=11 |  |
| 10486 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |