DMR 10521 chr1:40011301-40011500 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:40011301-40011500 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | PPIEL (0bp away) |
| ANODEV p-value | 0.00787661560116 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10521 | PPIEL | 698 | uc001cdk.3 | chr1 | 39987952 | 40025370 | - | 200 | 100.0 | 0.66 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (48), I6 (52), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10521 | chr1 | 40011402 | 40011430 | tfbsConsSites | V$MYOGNF1_01 | score:778, zScore:2.39, srow:93392 |
| 10521 | chr1 | 40011406 | 40011421 | tfbsConsSites | V$ARP1_01 | score:791, zScore:1.71, srow:93393 |
| 10521 | chr1 | 40011461 | 40011472 | tfbsConsSites | V$IK2_01 | score:942, zScore:1.87, srow:93394 |
| 10521 | chr1 | 40011466 | 40011474 | tfbsConsSites | V$GATA3_01 | score:928, zScore:1.78, srow:93395 |
| 10521 | chr1 | 40011400 | 40011408 | phastConsElements100way | lod=56 | score:392, srow:171465 |
| 10521 | chr1 | 40011410 | 40011417 | phastConsElements100way | lod=122 | score:469, srow:171466 |
| 10521 | chr1 | 40011419 | 40011420 | phastConsElements100way | lod=27 | score:320, srow:171467 |
| 10521 | chr1 | 40011422 | 40011422 | phastConsElements100way | lod=14 | score:255, srow:171468 |
| 10521 | chr1 | 40011425 | 40011426 | phastConsElements100way | lod=29 | score:327, srow:171469 |
| 10521 | chr1 | 40011428 | 40011429 | phastConsElements100way | lod=29 | score:327, srow:171470 |
| 10521 | chr1 | 40011431 | 40011453 | phastConsElements100way | lod=145 | score:486, srow:171471 |
| 10521 | chr1 | 40011455 | 40011456 | phastConsElements100way | lod=27 | score:320, srow:171472 |
| 10521 | chr1 | 40011458 | 40011465 | phastConsElements100way | lod=89 | score:438, srow:171473 |
| 10521 | chr1 | 40011467 | 40011468 | phastConsElements100way | lod=15 | score:262, srow:171474 |
| 10521 | chr1 | 40011470 | 40011498 | phastConsElements100way | lod=320 | score:564, srow:171475 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10521 | cellmeth_recounts | PrEC: 7, LNCaP: 3, DU145: 0 |  |
| 10521 | cellexp | id=ENSG00000182109, name=RP11-69E11.4, PrEC=63, str=146, LNCaP=95, str=55, DU145=41, str=31 |  |
| 10521 | cellexp | id=ENSG00000243970, name=PPIEL, PrEC=34, str=41, LNCaP=79, str=35, DU145=14, str=14 |  |
| 10521 | tcgaexp | gene=PPIEL, entrez=728448, pos=chr1:39987952-40025370(-), B=142, L=204, M=179, H=192 |  |
| 10521 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |