DMR 10632 chr1:54153051-54153250 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:54153051-54153250 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | GLIS1 (0bp away) |
| ANODEV p-value | 0.00393014734862 |
| Frequencies | Benign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10632 | GLIS1 | 905 | uc001cvr.1 | chr1 | 53971906 | 54199877 | - | 200 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10632 | chr1 | 54153137 | 54153326 | wgEncodeRegTfbsClusteredV3 | CTCF | score:144, expCount:1, expNums:630, expScores:144, srow:145120 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10632 | cellmeth_recounts | PrEC: 11, LNCaP: 0, DU145: 0 |  |
| 10632 | cellmeth_diffreps_PrECvsLNCaP | A=17, B=0, Length=360, Event=Down, log2FC=-Inf, padj=5.95437566994235e-05 |  |
| 10632 | cellmeth_diffreps_PrECvsDU145 | A=17, B=0, Length=360, Event=Down, log2FC=-Inf, padj=7.41301388411866e-05 |  |
| 10632 | cellexp | id=ENSG00000174332, name=GLIS1, PrEC=3, str=44, LNCaP=6, str=7, DU145=1, str=0 |  |
| 10632 | tcgaexp | gene=GLIS1, entrez=148979, pos=chr1:53971906-54199877(-), B=545, L=236, M=201, H=164 |  |
| 10632 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |