DMR 10668 chr1:61872251-61872450 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:61872251-61872450 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | NFIA (0bp away) |
| ANODEV p-value | 0.00790568276384 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10668 | NFIA | 961 | uc001czv.3 | chr1 | 61547980 | 61928460 | + | 200 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (74.5), I9 (26), E10 (0) | 0.0 |
| 10668 | NFIA | 961 | uc001czw.3 | chr1 | 61547980 | 61928460 | + | 200 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (74.5), I9 (26), E10 (0), I10 (0), E11 (0) | 0.0 |
| 10668 | NFIA | 961 | uc001czx.3 | chr1 | 61869748 | 61928460 | + | 200 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (74.5), I2 (26), E3 (0), I3 (0), E4 (0) | 0.0 |
| 10668 | NFIA | 961 | uc001czy.3 | chr1 | 61542946 | 61928460 | + | 200 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (74.5), I9 (26), E10 (0), I10 (0), E11 (0) | 0.0 |
| 10668 | NFIA | 961 | uc009wae.3 | chr1 | 61872234 | 61928460 | + | 200 | 100.0 | 0.01 | 1 | 100.0 | E1 (74.5), I1 (26), E2 (0), I2 (0), E3 (0) | 0.0 |
| 10668 | NFIA | 961 | uc010oos.2 | chr1 | 61547534 | 61928460 | + | 200 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (74.5), I10 (26), E11 (0), I11 (0), E12 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10668 | chr1 | 61872255 | 61872268 | tfbsConsSites | V$CEBPB_02 | score:857, zScore:1.87, srow:156083 |
| 10668 | chr1 | 61872255 | 61872268 | tfbsConsSites | V$FOXO4_02 | score:834, zScore:1.99, srow:156084 |
| 10668 | chr1 | 61872258 | 61872271 | tfbsConsSites | V$FAC1_01 | score:861, zScore:2.22, srow:156085 |
| 10668 | chr1 | 61872271 | 61872300 | tfbsConsSites | V$HOX13_01 | score:711, zScore:1.79, srow:156086 |
| 10668 | chr1 | 61872272 | 61872283 | tfbsConsSites | V$PAX4_03 | score:946, zScore:2.34, srow:156087 |
| 10668 | chr1 | 61872283 | 61872312 | tfbsConsSites | V$PAX4_04 | score:724, zScore:1.66, srow:156088 |
| 10668 | chr1 | 61872285 | 61872302 | tfbsConsSites | V$RFX1_02 | score:885, zScore:2.87, srow:156089 |
| 10668 | chr1 | 61872286 | 61872314 | tfbsConsSites | V$MYOGNF1_01 | score:762, zScore:2.13, srow:156090 |
| 10668 | chr1 | 61872304 | 61872322 | tfbsConsSites | V$SEF1_C | score:764, zScore:2.54, srow:156091 |
| 10668 | chr1 | 61872307 | 61872316 | tfbsConsSites | V$CDPCR1_01 | score:890, zScore:2.72, srow:156092 |
| 10668 | chr1 | 61872308 | 61872327 | tfbsConsSites | V$P53_01 | score:678, zScore:1.76, srow:156093 |
| 10668 | chr1 | 61872335 | 61872350 | tfbsConsSites | V$HAND1E47_01 | score:926, zScore:3.35, srow:156094 |
| 10668 | chr1 | 61872358 | 61872365 | tfbsConsSites | V$ATF6_01 | score:912, zScore:2.34, srow:156095 |
| 10668 | chr1 | 61872385 | 61872398 | tfbsConsSites | V$ATF_01 | score:824, zScore:1.69, srow:156096 |
| 10668 | chr1 | 61872388 | 61872395 | tfbsConsSites | V$ATF6_01 | score:921, zScore:2.47, srow:156097 |
| 10668 | chr1 | 61872388 | 61872399 | tfbsConsSites | V$CREB_02 | score:868, zScore:1.97, srow:156098 |
| 10668 | chr1 | 61872395 | 61872409 | tfbsConsSites | V$CDPCR3_01 | score:797, zScore:1.88, srow:156099 |
| 10668 | chr1 | 61872295 | 61872295 | cosmic | COSM193466 | srow:36471 |
| 10668 | chr1 | 61872302 | 61872302 | cosmic | COSM1584669 | srow:36472 |
| 10668 | chr1 | 61872302 | 61872302 | cosmic | COSM911235 | srow:36473 |
| 10668 | chr1 | 61872310 | 61872310 | cosmic | COSM1343736 | srow:36474 |
| 10668 | chr1 | 61872310 | 61872310 | cosmic | COSM1343737 | srow:36475 |
| 10668 | chr1 | 61872378 | 61872378 | cosmic | COSM1286585 | srow:36476 |
| 10668 | chr1 | 61872378 | 61872378 | cosmic | COSM1286586 | srow:36477 |
| 10668 | chr1 | 61872392 | 61872392 | cosmic | COSM295821 | srow:36478 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10668 | cellmeth_recounts | PrEC: 5, LNCaP: 11, DU145: 0 |  |
| 10668 | cellexp | id=ENSG00000162599, name=NFIA, PrEC=2931, str=1715, LNCaP=4153, str=3816, DU145=1199, str=1071 |  |
| 10668 | tcgaexp | gene=NFIA, entrez=4774, pos=chr1:61542946-61928460(+), B=5680, L=4809, M=4618, H=3887 |  |
| 10668 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |