DMR 10735 chr1:87621551-87621700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:87621551-87621700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | LOC339524 (0bp away) |
| ANODEV p-value | 0.00390494682137 |
| Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10735 | LOC339524 | 1116 | uc001dme.2 | chr1 | 87458690 | 87634886 | + | 150 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0) | 0.0 |
| 10735 | LOC339524 | 1116 | uc001dmf.3 | chr1 | 87595448 | 87634886 | + | 150 | 100.0 | 0.02 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10735 | chr1 | 87621426 | 87621690 | wgEncodeRegDnaseClusteredV2 | 5 | score:617, srow:53390 |
| 10735 | chr1 | 87621449 | 87621738 | wgEncodeRegTfbsClusteredV3 | CTCF | score:141, expCount:1, expNums:16, expScores:141, srow:185181 |
| 10735 | chr1 | 87621559 | 87621567 | phastConsElements100way | lod=16 | score:268, srow:368116 |
| 10735 | chr1 | 87621572 | 87621574 | phastConsElements100way | lod=17 | score:274, srow:368117 |
| 10735 | chr1 | 87621588 | 87621603 | phastConsElements100way | lod=62 | score:402, srow:368118 |
| 10735 | chr1 | 87621627 | 87621632 | phastConsElements100way | lod=26 | score:316, srow:368119 |
| 10735 | chr1 | 87621635 | 87621638 | phastConsElements100way | lod=13 | score:247, srow:368120 |
| 10735 | chr1 | 87621649 | 87621917 | phastConsElements100way | lod=2063 | score:749, srow:368121 |
| 10735 | chr1 | 87619987 | 87621986 | cpgShelf | — | values(x.gr)[overs$srow, ]:2000 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10735 | cellmeth_recounts | PrEC: 1, LNCaP: 0, DU145: 0 |  |
| 10735 | cellexp | id=ENSG00000267272, name=LINC01140, PrEC=5, str=5, LNCaP=2, str=0, DU145=3, str=3 |  |
| 10735 | cellexp | id=ENSG00000267561, name=RP5-1052I5.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 10735 | tcgaexp | gene=LOC339524, entrez=339524, pos=chr1:87458690-87634886(+), B=89, L=63, M=75, H=77 |  |
| 10735 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |