DMR 1077 chr2:101768301-101768450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:101768301-101768450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | BC077729 (0bp away) |
| ANODEV p-value | 0.00853607992274 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1077 | BC077729 | 16755 | uc002tav.3 | chr2 | 101768122 | 101771874 | + | 150 | 100.0 | 0.36 | 1 | 100.0 | E1 (100), I1 (0), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1077 | chr2 | 101767546 | 101769110 | wgEncodeRegDnaseClusteredV2 | 124 | score:1000, srow:638962 |
| 1077 | chr2 | 101767486 | 101768357 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:42, expNums:61,62,78,105,147,163,168,191,192,206,207,259,275,307,328,330,336,340,362,366,402,403,445,446,461,522,523,525,563,564,577,596,599,602,613,616,619,622,632,633,634,637, expScores:230,1000,459,834,276,406,986,328,1000,162,859,454,309,138,661,241,184,347,266,315,1000,301,800,585,481,266,293,218,829,624,371,752,376,176,362,496,121,241,1000,1000,568,230, srow:2246886 |
| 1077 | chr2 | 101767683 | 101768350 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:814, expCount:3, expNums:384,390,572, expScores:255,541,814, srow:2246897 |
| 1077 | chr2 | 101767899 | 101768375 | wgEncodeRegTfbsClusteredV3 | MAZ | score:230, expCount:2, expNums:396,512, expScores:177,230, srow:2246909 |
| 1077 | chr2 | 101767908 | 101768503 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:303, expCount:1, expNums:368, expScores:303, srow:2246910 |
| 1077 | chr2 | 101768049 | 101768365 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:649, expCount:1, expNums:30, expScores:649, srow:2246917 |
| 1077 | chr2 | 101768260 | 101770259 | cpgShore | — | values(x.gr)[overs$srow, ]:27564 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1077 | cellmeth_recounts | PrEC: 0, LNCaP: 77, DU145: 1 |  |
| 1077 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=63, Length=460, Event=Up, log2FC=Inf, padj=0 |  |
| 1077 | cellmeth_diffreps_LNCaPvsDU145 | A=67.35, B=0.94, Length=440, Event=Down, log2FC=-6.17, padj=0 |  |
| 1077 | cellexp | id=ENSG00000204634, name=TBC1D8, PrEC=2050, str=1219, LNCaP=897, str=891, DU145=1340, str=1428 |  |
| 1077 | tcgameth | site:cg15864491, B=0.11, L=0.22, H=0.15 |  |