DMR 111 chr1:11561301-11561500 (200bp)

DMR Stats
Positionchr1:11561301-11561500 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesPTCHD2 (0bp away)
ANODEV p-value0.00469265153965
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
111 PTCHD2 211 uc001ash.4 chr1 11539295 11597640 + 200 100.0 2.21 0 0.0 E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) 0.0
111 PTCHD2 211 uc001asi.1 chr1 11561047 11586928 + 200 100.0 62.23 0 100.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
111 chr1 11561240 11561563 wgEncodeRegTfbsClusteredV3 E2F6 score:127, expCount:1, expNums:215, expScores:127, srow:29271
111 chr1 11561289 11561301 tfbsConsSites V$ZID_01 score:879, zScore:2.25, srow:25396
111 chr1 11561382 11561395 tfbsConsSites V$MYCMAX_01 score:830, zScore:2.21, srow:25397
111 chr1 11561430 11561443 tfbsConsSites V$SRF_Q6 score:811, zScore:1.68, srow:25398
111 chr1 11561499 11561507 tfbsConsSites V$GATA3_01 score:925, zScore:1.72, srow:25399
111 chr1 11561379 11561379 cosmic COSM163809 srow:6384
111 chr1 11561401 11561401 cosmic COSM72332 srow:6385
111 chr1 11561407 11561407 cosmic COSM1332881 srow:6386
111 chr1 11561436 11561436 cosmic COSM527605 srow:6387
111 chr1 11561450 11561450 cosmic COSM355540 srow:6388
111 chr1 11561472 11561472 cosmic COSM369624 srow:6389
111 chr1 11561473 11561473 cosmic COSM1320120 srow:6390
111 chr1 11561485 11561485 cosmic COSM1195958 srow:6391
111 chr1 11561293 11561309 phastConsElements100way lod=102 score:451, srow:45010
111 chr1 11561311 11561315 phastConsElements100way lod=39 score:356, srow:45011
111 chr1 11561317 11561339 phastConsElements100way lod=195 score:515, srow:45012
111 chr1 11561341 11561342 phastConsElements100way lod=17 score:274, srow:45013
111 chr1 11561344 11561351 phastConsElements100way lod=118 score:466, srow:45014
111 chr1 11561353 11561366 phastConsElements100way lod=163 score:498, srow:45015
111 chr1 11561368 11561387 phastConsElements100way lod=214 score:525, srow:45016
111 chr1 11561389 11561393 phastConsElements100way lod=56 score:392, srow:45017
111 chr1 11561395 11561396 phastConsElements100way lod=30 score:330, srow:45018
111 chr1 11561398 11561402 phastConsElements100way lod=65 score:407, srow:45019
111 chr1 11561404 11561405 phastConsElements100way lod=34 score:343, srow:45020
111 chr1 11561407 11561408 phastConsElements100way lod=36 score:348, srow:45021
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Omics Overlaps

Dmrid Omic Set Data Plot
111 cellmeth_recounts PrEC: 82, LNCaP: 13, DU145: 5
111 cellmeth_diffreps_PrECvsLNCaP A=419, B=52, Length=1120, Event=Down, log2FC=-3.01, padj=0
111 cellmeth_diffreps_PrECvsDU145 A=419, B=30, Length=1140, Event=Down, log2FC=-3.8, padj=0
111 cellexp id=ENSG00000204624, name=PTCHD2, PrEC=135, str=496, LNCaP=13, str=11, DU145=8, str=7
111 tcgameth site:cg24371425, B=0.52, L=0.69, H=0.68
111 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
111 tcgaexp gene=PTCHD2, entrez=57540, pos=chr1:11539295-11597640(+), B=48, L=126, M=129, H=140
111 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305