DMR 11729 chr2:73440151-73440350 (200bp)

DMR Stats
Positionchr2:73440151-73440350 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesSMYD5 (1015bp away)
ANODEV p-value0.0169351273577
FrequenciesBenign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
11729 chr2 73440306 73440835 wgEncodeRegDnaseClusteredV2 20 score:715, srow:629818
11729 chr2 73439604 73440158 wgEncodeRegTfbsClusteredV3 POLR2A score:248, expCount:3, expNums:192,256,445, expScores:248,168,112, srow:2214558
11729 chr2 73439636 73440551 oreganno OREG0014712 id:OREG0014712, srow:12593
11729 chr2 73439314 73441313 cpgShore — values(x.gr)[overs$srow, ]:27185
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
11729 cellmeth_recounts PrEC: 17, LNCaP: 1, DU145: 9
11729 cellmeth_diffreps_PrECvsLNCaP A=25, B=1, Length=380, Event=Down, log2FC=-4.64, padj=8.53718884068524e-06
11729 cellmeth_diffreps_PrECvsDU145 A=24, B=1, Length=260, Event=Down, log2FC=-4.58, padj=2.0670567223746e-05