DMR 11917 chr2:114355051-114355250 (200bp)
| DMR Stats | |
|---|---|
| Position | chr2:114355051-114355250 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | WASH2P (0bp away) |
| ANODEV p-value | 0.00496404213256 |
| Frequencies | Benign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11917 | WASH2P | 16895 | uc002tka.3 | chr2 | 114341230 | 114356613 | + | 200 | 100.0 | 0.16 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (6), E9 (76.5), I9 (18), E10 (0), I10 (0), E11 (0) | 0.0 |
| 11917 | WASH2P | 16895 | uc002tkd.3 | chr2 | 114346127 | 114356613 | + | 200 | 100.0 | 0.16 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (6), E8 (76.5), I8 (18), E9 (0), I9 (0), E10 (0) | 0.0 |
| 11917 | WASH2P | 16895 | uc002tkf.2 | chr2 | 114353261 | 114355215 | + | 165 | 82.5 | 0.21 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (6), E5 (76.5) | 100.0 |
| 11917 | WASH2P | 16895 | uc002tkh.3 | chr2 | 114353645 | 114356613 | + | 200 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (6), E4 (76.5), I4 (18), E5 (0), I5 (0), E6 (0) | 0.0 |
| 11917 | WASH2P | 16895 | uc010fkz.1 | chr2 | 114352637 | 114355140 | + | 90 | 45.0 | 0.16 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (45) | 100.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 11917 | chr2 | 114355241 | 114355450 | wgEncodeRegDnaseClusteredV2 | 17 | score:257, srow:644961 |
| 11917 | chr2 | 114355201 | 114355514 | wgEncodeRegTfbsClusteredV3 | CTCF | score:620, expCount:30, expNums:0,5,49,137,174,290,597,598,603,604,605,607,609,615,627,628,629,630,631,635,636,639,647,656,658,659,665,667,680,681, expScores:131,127,101,174,277,125,232,589,239,379,233,248,130,127,392,620,564,495,517,143,113,193,125,172,109,182,118,230,205,105, srow:2265572 |
| 11917 | chr2 | 114355241 | 114355480 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:193, expCount:1, expNums:149, expScores:193, srow:2265573 |
| 11917 | chr2 | 114355054 | 114355072 | phastConsElements100way | lod=85 | score:433, srow:4732930 |
| 11917 | chr2 | 114355074 | 114355135 | phastConsElements100way | lod=422 | score:592, srow:4732931 |
| 11917 | chr2 | 114355137 | 114355138 | phastConsElements100way | lod=33 | score:340, srow:4732932 |
| 11917 | chr2 | 114355140 | 114355144 | phastConsElements100way | lod=70 | score:414, srow:4732933 |
| 11917 | chr2 | 114355146 | 114355159 | phastConsElements100way | lod=138 | score:481, srow:4732934 |
| 11917 | chr2 | 114355161 | 114355165 | phastConsElements100way | lod=44 | score:368, srow:4732935 |
| 11917 | chr2 | 114355167 | 114355168 | phastConsElements100way | lod=28 | score:323, srow:4732936 |
| 11917 | chr2 | 114355170 | 114355220 | phastConsElements100way | lod=527 | score:614, srow:4732937 |
- 11 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 11917 | cellmeth_recounts | PrEC: 21, LNCaP: 21, DU145: 0 |  |
| 11917 | cellmeth_diffreps_PrECvsDU145 | A=31, B=0, Length=400, Event=Down, log2FC=-Inf, padj=6.13838086470065e-09 |  |
| 11917 | cellmeth_diffreps_LNCaPvsDU145 | A=19.24, B=0, Length=380, Event=Down, log2FC=-Inf, padj=5.38176525022975e-05 |  |
| 11917 | cellexp | id=ENSG00000146556, name=WASH2P, PrEC=417, str=370, LNCaP=569, str=189, DU145=286, str=238 |  |
| 11917 | tcgaexp | gene=WASH2P, entrez=375260, pos=chr2:114341230-114356613(+), B=1076, L=1104, M=1061, H=792 |  |