DMR 12359 chr2:237116151-237116400 (250bp)
| DMR Stats | |
|---|---|
| Position | chr2:237116151-237116400 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | ASB18 (0bp away) |
| ANODEV p-value | 0.000868987466104 |
| Frequencies | Benign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12359 | ASB18 | 17778 | uc010znh.2 | chr2 | 237103515 | 237172988 | - | 250 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 12359 | chr2 | 237116126 | 237116495 | wgEncodeRegDnaseClusteredV2 | 4 | score:228, srow:692995 |
| 12359 | chr2 | 237115979 | 237117978 | cpgShelf | — | values(x.gr)[overs$srow, ]:24246 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 12359 | cellmeth_recounts | PrEC: 25, LNCaP: 11, DU145: 5 |  |
| 12359 | cellmeth_diffreps_PrECvsLNCaP | A=38, B=9, Length=340, Event=Down, log2FC=-2.08, padj=0.000468711423882809 |  |
| 12359 | cellmeth_diffreps_PrECvsDU145 | A=38, B=4, Length=380, Event=Down, log2FC=-3.25, padj=1.42865869002077e-06 |  |
| 12359 | cellexp | id=ENSG00000182177, name=ASB18, PrEC=0, str=0, LNCaP=11, str=1, DU145=4, str=0 |  |
| 12359 | cellexp | id=ENSG00000233611, name=AC079135.1, PrEC=0, str=0, LNCaP=2, str=2, DU145=5, str=3 |  |
| 12359 | tcgaexp | gene=ASB18, entrez=401036, pos=chr2:237103515-237172988(-), B=0, L=0, M=0, H=0 |  |